Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   2.1  
AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           24   2.8  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           24   2.8  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    23   6.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   6.5  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   8.7  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 129 DEPKTFTEYTTSEHIRHQGYVSS-NTPLSSKIPVSQ 233
           ++P    +YT S++  H GY SS NT L  +I  SQ
Sbjct: 95  NKPDLKLQYTVSKYHDHSGYGSSRNTFLIGQIFPSQ 130


>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 461 PPTTTSTPRAKTQQLEEKTVAHTLTSS 541
           PPTTT  P   T      TVA T T++
Sbjct: 24  PPTTTVAPATTTVAPTTTTVAPTTTTT 50


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 461 PPTTTSTPRAKTQQLEEKTVAHTLTSS 541
           PPTTT  P   T      TVA T T++
Sbjct: 24  PPTTTVAPATTTVAPTTTTVAPTTTTT 50


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 440 GHHEDGRPPTTTSTPRAKTQQLEEKT 517
           GHH    PP+T    +    + ++KT
Sbjct: 284 GHHHHHLPPSTALVQQTNLAEQQQKT 309


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 455 RPRGDRSRRHVRTLALQRLEAFRLVRVSGEGDLAGAQVLHLLL 327
           R  G    R  R +AL+   AFR VR      LAG   + LLL
Sbjct: 801 REPGRLLERVQRKMALRVARAFRTVRYETATLLAGLTPICLLL 843


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 386 GGKPRAAGGQESVRDGASGHHEDGRPPTTTSTPRAKTQ 499
           GG     GGQ  V   A GH+  G    + S   A T+
Sbjct: 284 GGMGGLGGGQSLVAAHAQGHNPHGGAAQSMSALLADTK 321


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,586
Number of Sequences: 2352
Number of extensions: 8803
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)