Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063554-1|AAH63554.1|  724|Homo sapiens PLEKHG3 protein protein.      31   2.6  
AF319572-1|AAK07619.1|  279|Homo sapiens 3'-5' exonuclease TREX2...    30   4.5  
AF319571-1|AAK07618.1|  279|Homo sapiens 3'-5' exonuclease TREX2...    30   4.5  

>BC063554-1|AAH63554.1|  724|Homo sapiens PLEKHG3 protein protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 465 GGRPSSW*PLAPSRTDSCP 409
           GGRPS+W PL+P+ T S P
Sbjct: 535 GGRPSAWSPLSPTETFSWP 553


>AF319572-1|AAK07619.1|  279|Homo sapiens 3'-5' exonuclease
           TREX2-like protein protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 127 ATNPKPSQSTRRANTSGTRATCLPTLLYPLRSPFP 231
           A +P P  S  R +  G+R+ C PTL   LR+ +P
Sbjct: 4   AGSPLPRSSWPRMDDCGSRSRCSPTLCSSLRTCYP 38


>AF319571-1|AAK07618.1|  279|Homo sapiens 3'-5' exonuclease
           TREX2-like protein protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 127 ATNPKPSQSTRRANTSGTRATCLPTLLYPLRSPFP 231
           A +P P  S  R +  G+R+ C PTL   LR+ +P
Sbjct: 4   AGSPLPRSSWPRMDDCGSRSRCSPTLCSSLRTCYP 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,421,254
Number of Sequences: 237096
Number of extensions: 1341877
Number of successful extensions: 5080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5080
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)