Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    29   2.1  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   2.8  
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70753-2|CAA94760.1|  275|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    27   8.6  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    27   8.6  

>Z49911-1|CAA90131.2|  647|Caenorhabditis elegans Hypothetical
           protein M28.1 protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 459 RPSSW*PLAPSRTDSCPPAARGFPPCSCE 373
           RP S  PL+ S +  CPP      PC+CE
Sbjct: 221 RPGSTLPLSTSSSPDCPPLTT-CAPCACE 248


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +2

Query: 404 AGGQESVRDGASGHHEDG----RPPTTTSTPRAKTQQLEEKTVAHTLTSS 541
           +GG         GHH D     +PP +TSTP   T      T   T T++
Sbjct: 30  SGGHRPPSSYHGGHHNDDDCTTKPPKSTSTPSTSTSTPTTTTTTTTTTTT 79


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 RAAGGQESVRDGASGHHEDGRPPTTTSTPRAKTQQLEEKT 517
           RA  G +S R+G SG    GRP    ST R K Q  +E T
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEPSTWRLK-QDDDEAT 168


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 RAAGGQESVRDGASGHHEDGRPPTTTSTPRAKTQQLEEKT 517
           RA  G +S R+G SG    GRP    ST R K Q  +E T
Sbjct: 130 RAQHGADSKREGGSGSGNRGRPTKEPSTWRLK-QDDDEAT 168


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 398 RAAGGQESVRDGASGHHEDGRPPTTTSTPRAKTQQLEEKT 517
           RA  G +S R+G SG    GRP    ST R K Q  +E T
Sbjct: 107 RAQHGADSKREGGSGSGNRGRPTKEPSTWRLK-QDDDEAT 145


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 24  TIEKETQDLPANIDIQTVNTHKFSTFGK---DESPQRGDEPKTFTEYTTS 164
           T EK T         ++V+T K ST  K    E P   DEP T TE +T+
Sbjct: 606 TAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTTTTESSTT 655


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 461 PPTTTSTPRAKTQQLEEKTVAHTLTS 538
           PPTTT TPR  T+    +TVA T TS
Sbjct: 156 PPTTTVTPRT-TRSSTARTVATTKTS 180


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
 Frame = +3

Query: 30  EKETQDLPANIDIQTVNTHKFSTFGKDESPQRGDEPKTFTEYTTSEHIRHQGYVSSNTPL 209
           ++ET ++  N D   V T K     +          K  T   TS    HQG    NTP 
Sbjct: 262 KEETAEVAQNDD---VTTEKHQNEVEKSKKMLNFLAKPPTVEITSPDAPHQGAFHDNTPK 318

Query: 210 SSKIPVSQRAXXXXXXXXXXXXXXXQLLTKNEEGV--THNVE---QEVENLGTGEVTFST 374
             K+   +                 Q++ +  E V  T NVE   QE  ++  G V + T
Sbjct: 319 EPKVVEEEEDDDLPTFSEDMDEARQQVMKEMTESVVKTENVENEKQEDTHISEGHVEYGT 378

Query: 375 HTNKA 389
             + A
Sbjct: 379 EESPA 383


>Z70753-2|CAA94760.1|  275|Caenorhabditis elegans Hypothetical
           protein F40F9.3 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 88  NFLRSVKTKVHKEATNPKPSQSTRRANTSGTRATCL 195
           NFLR   +     A NP PS  T+     G R  C+
Sbjct: 189 NFLRKSPSCESAAAPNPVPSAMTKNKEGKGERKACI 224


>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 449 EDGRPPTTTSTPRAKTQQLEEKTV 520
           E   PP T ST  +KT  +EE TV
Sbjct: 107 EPVEPPATLSTETSKTNAIEESTV 130


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 18  NYTIE--KETQDLPANIDIQTVNTHKFSTF 101
           N+T +   ET  +  N+D + VNT K ST+
Sbjct: 645 NFTFQGHNETSQIMNNVDSEAVNTSKISTY 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,652,801
Number of Sequences: 27780
Number of extensions: 204388
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)