Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          25   0.49 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 425 RDGASGHHEDGRPPTTTSTPRAKTQQLEEKTVAHTL 532
           R G   HH+D RP T   T R K  +L    + H+L
Sbjct: 116 RKGVVFHHDDARPHTYLVT-RQKLLELGWDVLPHSL 150


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 425 RDGASGHHEDGRPPTTTSTPRAKTQQLEEKTVAH 526
           R G   HH++ RP T+  T R K  +L    + H
Sbjct: 237 RKGVVFHHDNARPHTSLVT-RQKLLELGWDVLPH 269


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 82  VFTVWMSMFAGRSCVSFSIV 23
           +FT+W S+FA  + V   IV
Sbjct: 311 LFTIWGSLFAKANAVYNPIV 330


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 144 RFWVRRLFVDFRL 106
           RFW+RR F  FR+
Sbjct: 210 RFWLRRGFDGFRV 222


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 144 RFWVRRLFVDFRL 106
           RFW+RR F  FR+
Sbjct: 210 RFWLRRGFDGFRV 222


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +2

Query: 365 LLHSH-EQGGKPRAAGGQESVRDGASGHHEDGRPPTTTST 481
           LLH    Q  +    G Q        GH + GRP  TT+T
Sbjct: 190 LLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTAT 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,248
Number of Sequences: 438
Number of extensions: 2350
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)