Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1260
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39930.1 68418.m04842 expressed protein ; expression supporte...    28   4.6  
At4g20470.1 68417.m02986 hypothetical protein                          27   6.1  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    27   6.1  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   8.0  

>At5g39930.1 68418.m04842 expressed protein ; expression supported
           by MPSS
          Length = 423

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 63  DIQTVNTHKFSTFGKDESPQRGDEPKTFTEYTTSEHI 173
           D+Q      F   G   + QRG++P   T  T  EH+
Sbjct: 325 DVQVYRIGDFRVSGSTSAHQRGNDPLKITLVTIDEHL 361


>At4g20470.1 68417.m02986 hypothetical protein 
          Length = 140

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 412 PSSGSRLSALFV*VEKVTSPVPRFSTSCSTLCVTPSSFLVNS 287
           P S S ++ LF  +  + S  P+FS + S LC+  SS+L NS
Sbjct: 98  PFSISTITQLFFFLLSLNSCFPKFSGTLSYLCL-DSSYLPNS 138


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 383 QGGKPRAAGGQESVRDGASGHHEDGR-PPTTTSTPRAKTQQLEEK 514
           QGG+ + +  ++      SG H+D + P T T+T  A T Q  EK
Sbjct: 121 QGGRRKKSIKEKIKEKFGSGKHKDEQTPATATTTGPATTDQPHEK 165


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 100 SVKTKVHKEATNPKPSQSTRRANTS 174
           +V  K H+E+ + KPSQ  ++A+TS
Sbjct: 920 TVDCKDHEESLSNKPSQKVKKAHTS 944


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,275,697
Number of Sequences: 28952
Number of extensions: 194711
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)