Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1259
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    55   9e-09
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   1.5  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   2.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.7  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    26   4.7  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   6.2  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   6.2  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 28/72 (38%), Positives = 46/72 (63%)
 Frame = +3

Query: 210 ERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVLK 389
           ERVLC+        +LY++K+++     + +G  T  YLIH++GW +SWD  V +D +L+
Sbjct: 9   ERVLCFH-----GPLLYEAKIVDT----EMKGDVTT-YLIHYKGWKNSWDEWVEQDRILQ 58

Query: 390 DTEENRQLQRDL 425
            TEEN + Q++L
Sbjct: 59  WTEENLKTQKEL 70


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 570  AGYLSKSRRR*SHDGCAWRAPPRRRLYYHPSFV 472
            +GY +   +R SH+GC         +Y HPS V
Sbjct: 1055 SGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGV 1087


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 238 GSGS*HRTRSPSVNLYRSPRVETIVN*CLAQNRWELNKITPFNKCDG 98
           G+G   +   P  N Y +P    + +  +  +   L ++TPF K DG
Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSKRLQRLTPFKKWDG 571


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = +3

Query: 87  LQI*PSHLLNGVILLSSHRF---WARHQLTMVSTRGLRYKFTEGERVLCYEPD--PTKAK 251
           L + PS  +    LL S +    W RH   + +   L  K T  E V  ++PD      K
Sbjct: 140 LLVCPSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLK 199

Query: 252 VLYDSKVLEVVES 290
           +L D    + + S
Sbjct: 200 LLKDYSYAQAISS 212


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 211 NESCATSQTLLKPRCF---MIPRFLKS*RAKTNEGVELLSI 324
           N + +T   +L   C+   +IP+ +K+ RAK+ EG++ L I
Sbjct: 15  NATASTVFAILGTVCWCVQLIPQIIKNYRAKSTEGLDTLFI 55


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 387 KDTEENRQLQRDLAEKSQLQLGAYLYRRER 476
           K  E N++L +DL E SQLQ   Y Y   R
Sbjct: 34  KALEGNKELNKDLQEDSQLQKD-YKYDESR 62


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 353 RRVPSLEMD*ILNSSTPSFVFALYDFKNLGIIKHLGFSRVWL 228
           +R+PS +   IL      FV  +   +N G  K +G  +VWL
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWL 600


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 531 DGCAWRAPPRRRLYYHPSF-VPDGTSKP 451
           D C+W      R +YHP F +P   + P
Sbjct: 352 DECSWHHLDMLRFFYHPCFKLPSDPTYP 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,899
Number of Sequences: 5004
Number of extensions: 45382
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)