BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1259 (589 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 55 9e-09 SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 1.5 SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 27 2.7 SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.7 SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 4.7 SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 25 6.2 SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 6.2 SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.2 >SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp13|Schizosaccharomyces pombe|chr 1|||Manual Length = 337 Score = 54.8 bits (126), Expect = 9e-09 Identities = 28/72 (38%), Positives = 46/72 (63%) Frame = +3 Query: 210 ERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVLK 389 ERVLC+ +LY++K+++ + +G T YLIH++GW +SWD V +D +L+ Sbjct: 9 ERVLCFH-----GPLLYEAKIVDT----EMKGDVTT-YLIHYKGWKNSWDEWVEQDRILQ 58 Query: 390 DTEENRQLQRDL 425 TEEN + Q++L Sbjct: 59 WTEENLKTQKEL 70 >SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosaccharomyces pombe|chr 1|||Manual Length = 1168 Score = 27.5 bits (58), Expect = 1.5 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -2 Query: 570 AGYLSKSRRR*SHDGCAWRAPPRRRLYYHPSFV 472 +GY + +R SH+GC +Y HPS V Sbjct: 1055 SGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGV 1087 >SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 26.6 bits (56), Expect = 2.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -1 Query: 238 GSGS*HRTRSPSVNLYRSPRVETIVN*CLAQNRWELNKITPFNKCDG 98 G+G + P N Y +P + + + + L ++TPF K DG Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSKRLQRLTPFKKWDG 571 >SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1502 Score = 25.8 bits (54), Expect = 4.7 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Frame = +3 Query: 87 LQI*PSHLLNGVILLSSHRF---WARHQLTMVSTRGLRYKFTEGERVLCYEPD--PTKAK 251 L + PS + LL S + W RH + + L K T E V ++PD K Sbjct: 140 LLVCPSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLK 199 Query: 252 VLYDSKVLEVVES 290 +L D + + S Sbjct: 200 LLKDYSYAQAISS 212 >SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces pombe|chr 1|||Manual Length = 283 Score = 25.8 bits (54), Expect = 4.7 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = +1 Query: 211 NESCATSQTLLKPRCF---MIPRFLKS*RAKTNEGVELLSI 324 N + +T +L C+ +IP+ +K+ RAK+ EG++ L I Sbjct: 15 NATASTVFAILGTVCWCVQLIPQIIKNYRAKSTEGLDTLFI 55 >SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 289 Score = 25.4 bits (53), Expect = 6.2 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 387 KDTEENRQLQRDLAEKSQLQLGAYLYRRER 476 K E N++L +DL E SQLQ Y Y R Sbjct: 34 KALEGNKELNKDLQEDSQLQKD-YKYDESR 62 >SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 25.4 bits (53), Expect = 6.2 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -3 Query: 353 RRVPSLEMD*ILNSSTPSFVFALYDFKNLGIIKHLGFSRVWL 228 +R+PS + IL FV + +N G K +G +VWL Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWL 600 >SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 25.0 bits (52), Expect = 8.2 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Frame = -2 Query: 531 DGCAWRAPPRRRLYYHPSF-VPDGTSKP 451 D C+W R +YHP F +P + P Sbjct: 352 DECSWHHLDMLRFFYHPCFKLPSDPTYP 379 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,330,899 Number of Sequences: 5004 Number of extensions: 45382 Number of successful extensions: 134 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 133 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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