Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1259
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0028 - 19393700-19393899,19394058-19394116,19394437-193945... 33 0.22
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825... 31 0.68
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 30 1.2
01_01_0890 + 7014131-7014168,7014443-7014532,7015468-7015698,701... 30 1.6
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 29 2.1
05_07_0134 - 27911920-27912762 29 3.6
10_08_0295 - 16581014-16583071 28 4.8
08_02_0556 + 18592393-18592580,18592839-18593031,18593110-185934... 28 4.8
07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706 28 4.8
01_06_0223 + 27669759-27670286 28 4.8
05_05_0304 - 23965842-23965849,23965940-23966107,23966303-239665... 28 6.3
>11_06_0028 -
19393700-19393899,19394058-19394116,19394437-19394521,
19395305-19395474,19397534-19397613,19398288-19398392,
19399268-19399308,19399400-19399438,19400473-19400818,
19401762-19401815,19402249-19402350
Length = 426
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 198 FTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSW 356
F EGERVL Y +LY++KV + E+K+ R V YL H ++ W
Sbjct: 16 FKEGERVLAYH-----GPLLYEAKV-QKSENKEDEWRYHVHYLCHIVVYHHVW 62
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 351 SWDRCVSEDFVLKDTEENRQLQRDLAEKSQL 443
SWD V+ D +LK T+EN + Q++L EKSQ+
Sbjct: 119 SWDEWVTNDRLLKLTDENIRKQQEL-EKSQV 148
>04_01_0003 +
79564-79698,79879-79956,81025-81388,82399-82437,
82561-82601,83258-83362,83914-83919,84044-84123,
86744-86913,87664-87748,88067-88125,88451-88464
Length = 391
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +3
Query: 351 SWDRCVSEDFVLKDTEENRQLQRDLAEKSQ 440
SWD V+ D +LK T+EN + Q++L EKSQ
Sbjct: 144 SWDEWVTNDRLLKLTDENIRKQQEL-EKSQ 172
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 198 FTEGERVLCYE-PDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQG 341
F EGERVL Y P +AK+L S L+V +S++K Y +H+ G
Sbjct: 27 FKEGERVLAYHGPLLYEAKIL-SSGFLKVQKSENKEDE--WRYHVHYLG 72
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 421 SRCSCRFSSVSLRTKSSLTQRSHE 350
SRCSCR+ S R+ SSLT R +
Sbjct: 679 SRCSCRYRSRRTRSPSSLTPRDQD 702
>01_01_0890 +
7014131-7014168,7014443-7014532,7015468-7015698,
7015931-7015944,7016569-7016925,7017033-7017379
Length = 358
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 EPDPTKAKVLYDSKVLEVVESKDKRGRR-TVEYLIHFQGWNSSWDRCVSEDFVLKDTEEN 404
+PD KA + E KDK RR TV L+ W +SW+ + E ++ K E N
Sbjct: 50 DPDSDKAHWYMSNSDDESFVDKDKDCRRGTVAPLLKKGPW-TSWENSILEKYIKKHGERN 108
Query: 405 RQL 413
+L
Sbjct: 109 WKL 111
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 69 VFLTKILQI*PSHLLNGVILLSSHR 143
+FLTKI ++ SH+++G +L++S R
Sbjct: 717 IFLTKIKKVIESHIMDGKVLIASFR 741
>05_07_0134 - 27911920-27912762
Length = 280
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 554 RAVVAKAMTGALGGPRPGGACTTTLLSFPTV 462
RAVV A +G L G RPGG S P++
Sbjct: 57 RAVVLDAASGVLAGLRPGGVLVDCTSSSPSL 87
>10_08_0295 - 16581014-16583071
Length = 685
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 421 SRCSCRFSSVSLRTKSSLTQRSHE 350
SRCSCR S R+ SSLT R +
Sbjct: 369 SRCSCRCRSRRTRSPSSLTPRGQD 392
>08_02_0556 +
18592393-18592580,18592839-18593031,18593110-18593499,
18593576-18593686,18593789-18593867,18594048-18594109,
18594182-18594238,18594498-18594581
Length = 387
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 120 VILLSSHRFWARHQLTMVSTRGLRYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDK 299
V++ H F A ++T++ LR+KF +G V C KA + S+ L +S+ K
Sbjct: 106 VVIAHYHNFPAHTRITILKEFLLRFKFADGREVDCARLFYRKAVERF-SQALSHEKSEAK 164
Query: 300 R 302
R
Sbjct: 165 R 165
>07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706
Length = 168
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 439 SFS*GLTCTVGNERRVVVQAPPGRGPPSAPVMAL 540
SFS T +G +R V APP G P +PV L
Sbjct: 17 SFSCSSTRILGRKRVAVSPAPPPSGGPHSPVRTL 50
>01_06_0223 + 27669759-27670286
Length = 175
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 469 GNERRVVVQAPPGRGPPSAPVMALATTA 552
G E QAPP PP+ PVM A A
Sbjct: 32 GVEESAAAQAPPHPHPPAPPVMEAAAAA 59
>05_05_0304 -
23965842-23965849,23965940-23966107,23966303-23966575,
23966676-23967039,23967762-23968133
Length = 394
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 228 EPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVLKDTEENR 407
+PD + + E KDK RR+ L+ +G +SW+ + E ++ K E N
Sbjct: 7 DPDSDRTHWYMSNSDDESFVDKDKDCRRSTVALLLKKGPWTSWEDSILEKYIKKHGERNW 66
Query: 408 QL 413
+L
Sbjct: 67 KL 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,562
Number of Sequences: 37544
Number of extensions: 318110
Number of successful extensions: 925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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