Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1259
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         65   4e-11
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    36   0.025
SB_15834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)                   28   4.9  

>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 35/83 (42%), Positives = 49/83 (59%)
 Frame = +3

Query: 189 RYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCV 368
           + KF EGERVLCY        ++Y++K +   + K+K    T  YLIH+ GWN +WD  V
Sbjct: 4   KLKFAEGERVLCYH-----GPLIYEAKCIRG-QLKEK----TARYLIHYNGWNKNWDEWV 53

Query: 369 SEDFVLKDTEENRQLQRDLAEKS 437
            E  VLK  + N Q QR+L E++
Sbjct: 54  PESRVLKYNDANLQKQRELREQN 76


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +3

Query: 249 KVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVL-KDTEENRQ 410
           +++Y++K+  +    D+     + +LIH+ GWN+ +D  +S D V+ K T ++R+
Sbjct: 478 QLIYEAKITTI----DENAEEGILFLIHYAGWNNRYDEWISPDRVVGKSTCQSRK 528


>SB_15834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 196 NSLRENESCATSQTLLKPRCFMIPRFLKS*RAKTNEGVELLSI*SISKDGTLRGIAASVK 375
           ++ REN      + + K R  MIP +L   R+KT      L I ++  +G  R + AS K
Sbjct: 57  STTRENIERKKREKVDKWRVQMIPHYLPDYRSKTLFANCQLHIWAV--EGLSRLVVASFK 114

Query: 376 -TSFSKIQRKIDSC 414
             +F  +Q+ +D C
Sbjct: 115 EDTFGVVQKALDQC 128


>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
          Length = 1097

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 225 YEPDPTKAKVL--YDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDR 362
           YEP+  K  V   +  K+  V++++ KRG R  EY +H++GW     R
Sbjct: 612 YEPELQKVHVTEAHPFKIDRVLKTR-KRGGRD-EYWVHWKGWPDKGSR 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,514
Number of Sequences: 59808
Number of extensions: 345697
Number of successful extensions: 917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)