Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1259
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 493 QAPPGRGPPSAP 528
           Q PP  GPP AP
Sbjct: 44  QGPPPGGPPGAP 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 481  RVVVQAPPGRGPPSAPVM 534
            RV+ + P GR  PSA ++
Sbjct: 981  RVIAEGPAGRSVPSAELI 998


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 481  RVVVQAPPGRGPPSAPVM 534
            RV+ + P GR  PSA ++
Sbjct: 977  RVIAEGPAGRSVPSAELI 994


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 528 GCAWRAPPRRRLYYHPSFVPD 466
           G AW     R+ YY   F P+
Sbjct: 170 GSAWSWREERQAYYLHQFAPE 190


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -3

Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345
           ALG    GG   +++LS     ++  L       +TL L++   +   ++F D    + +
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -3

Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345
           ALG    GG   +++LS     ++  L       +TL L++   +   ++F D    + +
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -3

Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345
           ALG    GG   +++LS     ++  L       +TL L++   +   ++F D    + +
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -3

Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345
           ALG    GG   +++LS     ++  L       +TL L++   +   ++F D    + +
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 528 GCAWRAPPRRRLYYHPSFVPD 466
           G AW     R+ YY   F P+
Sbjct: 170 GSAWSWREERQAYYLHQFAPE 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,602
Number of Sequences: 438
Number of extensions: 3244
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)