BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1259 (589 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.9 AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 3.9 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.9 D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 21 9.0 DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 9.0 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 9.0 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 9.0 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 9.0 AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 21 9.0 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 22.6 bits (46), Expect = 2.9 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +1 Query: 493 QAPPGRGPPSAP 528 Q PP GPP AP Sbjct: 44 QGPPPGGPPGAP 55 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 22.2 bits (45), Expect = 3.9 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +1 Query: 481 RVVVQAPPGRGPPSAPVM 534 RV+ + P GR PSA ++ Sbjct: 981 RVIAEGPAGRSVPSAELI 998 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 22.2 bits (45), Expect = 3.9 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +1 Query: 481 RVVVQAPPGRGPPSAPVM 534 RV+ + P GR PSA ++ Sbjct: 977 RVIAEGPAGRSVPSAELI 994 >D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. Length = 567 Score = 21.0 bits (42), Expect = 9.0 Identities = 8/21 (38%), Positives = 10/21 (47%) Frame = -2 Query: 528 GCAWRAPPRRRLYYHPSFVPD 466 G AW R+ YY F P+ Sbjct: 170 GSAWSWREERQAYYLHQFAPE 190 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 21.0 bits (42), Expect = 9.0 Identities = 13/60 (21%), Positives = 26/60 (43%) Frame = -3 Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345 ALG GG +++LS ++ L +TL L++ + ++F D + + Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 21.0 bits (42), Expect = 9.0 Identities = 13/60 (21%), Positives = 26/60 (43%) Frame = -3 Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345 ALG GG +++LS ++ L +TL L++ + ++F D + + Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 21.0 bits (42), Expect = 9.0 Identities = 13/60 (21%), Positives = 26/60 (43%) Frame = -3 Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345 ALG GG +++LS ++ L +TL L++ + ++F D + + Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 21.0 bits (42), Expect = 9.0 Identities = 13/60 (21%), Positives = 26/60 (43%) Frame = -3 Query: 524 ALGGPRPGGACTTTLLSFPTVQVSP*LKL*FFS*ITLQLSIFLCIFENEVFTDAAIPRRV 345 ALG GG +++LS ++ L +TL L++ + ++F D + + Sbjct: 5 ALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAEDIFEDGKSDKEI 64 >AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase protein. Length = 567 Score = 21.0 bits (42), Expect = 9.0 Identities = 8/21 (38%), Positives = 10/21 (47%) Frame = -2 Query: 528 GCAWRAPPRRRLYYHPSFVPD 466 G AW R+ YY F P+ Sbjct: 170 GSAWSWREERQAYYLHQFAPE 190 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 157,602 Number of Sequences: 438 Number of extensions: 3244 Number of successful extensions: 11 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17115420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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