Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1259
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37280.1 68417.m05276 MRG family protein contains Pfam domain... 57 8e-09
At4g36105.1 68417.m05139 expressed protein 31 0.57
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 30 1.3
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3... 29 3.0
At1g47765.1 68414.m05312 F-box family protein contains F-box dom... 29 3.0
At5g04550.1 68418.m00455 expressed protein contains Pfam domain ... 28 4.0
At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1... 28 4.0
At5g56700.1 68418.m07077 F-box protein-related contains a partia... 27 7.0
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 27 9.3
>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
PF05712: MRG
Length = 320
Score = 57.2 bits (132), Expect = 8e-09
Identities = 34/85 (40%), Positives = 48/85 (56%)
Frame = +3
Query: 198 FTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSED 377
F+EGERVL Y +Y +KV + VE + K + Y +H+ GWN +WD VS D
Sbjct: 29 FSEGERVLAYH-----GPRVYGAKV-QKVELRKKEWK----YFVHYLGWNKNWDEWVSAD 78
Query: 378 FVLKDTEENRQLQRDLAEKSQLQLG 452
+LK TEEN Q+ L +K ++ G
Sbjct: 79 RLLKHTEENLVKQKALDKKQGVEKG 103
>At4g36105.1 68417.m05139 expressed protein
Length = 245
Score = 31.1 bits (67), Expect = 0.57
Identities = 23/93 (24%), Positives = 43/93 (46%)
Frame = +3
Query: 171 VSTRGLRYKFTEGERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNS 350
V + L + + ER++ E + K + + VL+ + S +R +T+E + +
Sbjct: 137 VQIQNLSLRLEQTERIVMTECESLKNALTASNNVLDTLLSSSRRHFQTIEARLVAKSTQL 196
Query: 351 SWDRCVSEDFVLKDTEENRQLQRDLAEKSQLQL 449
++ E V K EEN +L L +K + QL
Sbjct: 197 EGEKAQKEVQVQKLMEENMKL-TTLLDKKEAQL 228
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 393 TEENRQLQRDLAEKSQLQLGAYLY 464
TEENR+LQ++++E L+L +LY
Sbjct: 235 TEENRRLQKEVSELRALKLSPHLY 258
>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
HD-ZIP protein 3 identical to Homeobox-leucine zipper
protein HAT3 (SP:P46602) [Arabidopsis thaliana]
Length = 315
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 393 TEENRQLQRDLAEKSQLQLGAYLY 464
T+ENR+LQ++++E L+L +LY
Sbjct: 234 TDENRRLQKEVSELRALKLSPHLY 257
>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
Pfam:PF00646
Length = 385
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -3
Query: 407 SIFLCIFENEVFTDAAIPRRVPSLEMD*ILNSSTPSFVFALYDF-KNLGII 258
S+ +C EN+ ++IP+ + SL+ SS+ F+ ++++ K++G+I
Sbjct: 74 SLLVCFIENDKLFVSSIPQHLHSLQNSKRSYSSSQLFIVIIWNYQKDVGLI 124
>At5g04550.1 68418.m00455 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 599
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 174 RPLLTDALPKTDGNLIKSLHLTNAMVKFVKF 82
RP L+DA P T G +LH N ++ +F
Sbjct: 422 RPKLSDAAPNTLGTACLALHYANVIIVIERF 452
>At4g17460.1 68417.m02612 homeobox-leucine zipper protein 1 (HAT1) /
HD-ZIP protein 1 identical to Homeobox-leucine zipper
protein HAT1 (SP:P46600) [Arabidopsis thaliana]
Length = 282
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 381 VLKDTEENRQLQRDLAEKSQLQLGAYLY 464
V K TEENR+L+++ AE L+L LY
Sbjct: 203 VEKLTEENRRLEKEAAELRALKLSPRLY 230
>At5g56700.1 68418.m07077 F-box protein-related contains a partial
F-box domain Pfam:PF00646
Length = 360
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 102 MVKFVKF*LKTQK--KTMICNNLAILTGCGRPNDSS 1
+VK + F L T++ T +C N GCG PN SS
Sbjct: 12 LVKILSF-LPTKEAVSTSVCRNNGSFFGCGCPNSSS 46
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 385 RTKSSLTQRSHEEFH 341
RT+S+LT +SHE FH
Sbjct: 715 RTRSTLTTQSHEHFH 729
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,405,903
Number of Sequences: 28952
Number of extensions: 246129
Number of successful extensions: 679
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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