Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1258
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   4.8  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   6.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   6.3  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.3  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 324 RRACGHAPSRRDEPASHVQQPLGS 253
           +RA     S RDE  +HVQ  LG+
Sbjct: 63  KRAITQQHSERDERLAHVQAQLGA 86


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 470 EASKLFDDG-DEPWQKQLESV 411
           E S L+  G D PWQ++ E+V
Sbjct: 216 ENSPLYWGGADTPWQREYENV 236


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 51  QNTEYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL 200
           Q+ ++    + L  R  ++ ++YN +  K F    K    +AK+EKE  L
Sbjct: 74  QSLQFRLLENKLGVRQENR-VKYNQNYSKVFGNDEKALEQIAKSEKEPSL 122


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 51  QNTEYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL 200
           Q+ ++    + L  R  ++ ++YN +  K F    K    +AK+EKE  L
Sbjct: 134 QSLQFRLLENKLGVRQENR-VKYNQNYSKVFGNDEKALEQIAKSEKEPSL 182


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 51  QNTEYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL 200
           Q+ ++    + L  R  ++ ++YN +  K F    K    +AK+EKE  L
Sbjct: 134 QSLQFRLLENKLGVRQENR-VKYNQNYSKVFGNDEKALEQIAKSEKEPSL 182


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 123 NCTAFLWRHI 94
           N TAFLW HI
Sbjct: 165 NKTAFLWYHI 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,315
Number of Sequences: 336
Number of extensions: 2997
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)