Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1258
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 55 4e-08
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420... 29 3.0
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 29 3.9
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 29 3.9
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 28 5.2
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 28 5.2
02_05_0649 + 30612084-30612464,30613288-30613386,30613786-306140... 28 5.2
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 5.2
04_04_1635 - 34943881-34945233,34945321-34945524 28 6.9
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 6.9
01_01_1191 + 9487835-9488467,9492584-9492787 28 6.9
08_02_1252 + 25595776-25596564 27 9.1
02_05_0979 + 33268294-33269595 27 9.1
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Frame = +3
Query: 228 LEAAVHDIDFPAAAEH---EKRVRHDVMAHVHTLGERC---PLAAPII---HLGATSCYV 380
L+A + D A E EK HDV A + L ++C P A ++ H G TS +
Sbjct: 142 LDAIIQDFSVADAKEVKKIEKTTNHDVKAVEYFLKQKCSSNPEIAKVLEFFHFGCTSEDI 201
Query: 381 GDNTDLIVLKNGLE-LLLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGK 545
+ + + LK G+ ++ P ++ + K + S A Q ++P+L TH QPA TT+GK
Sbjct: 202 NNLSHALALKEGVNTVMFPVMMDICKAMCSLATQNSTIPMLSRTHGQPASPTTLGK 257
>01_03_0012 +
11638363-11638476,11638854-11640678,11641855-11642096,
11642198-11642327,11642464-11642774
Length = 873
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 99 HIVYSKVTGNYSIRYFAIQQGRQLWSFYRI 10
H+V+ +V N S+RYF + RQ+ Y I
Sbjct: 42 HVVFQRVENNCSLRYFTENEIRQITRGYSI 71
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 390 TDL-IVLKNGLELLLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLN 566
TDL + ++ ++ +L R+ L A +Y L + G+THLQ AQ + ++
Sbjct: 525 TDLRLWCRDAIDKILFRIKQFQVSLVLLASKYVDLIVPGYTHLQRAQPVLLPHLLLSYVE 584
Query: 567 DLLMDERALSRAKDDLGF 620
L D L ++ L F
Sbjct: 585 QLERDAGRLVNCRERLNF 602
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 345 ARRGDTSRRACGHAPSRRDEPASHVQQPLGSRC 247
ARRGD + G A RRDE AS + L + C
Sbjct: 211 ARRGDAAEAELGEALERRDEAASTAAE-LSAEC 242
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 508 VKPRMGKDLYCFAKLPSCLMTATSL-GRSSSSPFLRTIKSVLSPT*HEVAPR 356
VKP+MG L ++ P + ATSL G S S ++ I V P H APR
Sbjct: 272 VKPKMGDALLFWSMRPDGSLDATSLHGLESWSRLVKRI-HVRVPPCHRPAPR 322
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 446 GDEPWQKQLESVLKDY 399
GDE +QK+L+ +LKDY
Sbjct: 110 GDEDFQKELDGILKDY 125
>02_05_0649 +
30612084-30612464,30613288-30613386,30613786-30614049,
30614180-30614548
Length = 370
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 434 WQKQLESVLKDYQIGVVSDVARGGSQVYDGR 342
WQ+ + S L Y G + V+ GG ++ DGR
Sbjct: 230 WQQDILSQLNLYGEGAILKVSIGGPEIVDGR 260
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 494 GQRLVLFREASKLFDDGDEPWQKQLESVLKD 402
G+R V + KL +DG+ +Q++ +++L D
Sbjct: 521 GERTVAVKRLEKLVEDGEREFQREPQNILMD 551
>04_04_1635 - 34943881-34945233,34945321-34945524
Length = 518
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +3
Query: 78 SPLSTRYASKEMQYNFSDQ--KKFSTWRKLWIYLAKAEKELGLDISAAQIAELEAAVHDI 251
+PL+ Y +E ++ SD + T + + A +LGL + A + + VH
Sbjct: 84 APLNPAYTQEEFEFYLSDSGARLLITNPEGNVAAQAAASKLGLAHTTASLKDAAGQVHLA 143
Query: 252 DFP----AAAEHEKRVRHDVMAHVHTLG 323
FP AAA+ DV +HT G
Sbjct: 144 GFPASAAAAAKDFANDPSDVALFLHTSG 171
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -1
Query: 425 QLESVLKDYQIGVVSDVARGGSQVYDGRGEGTPLAERVDMRHHVVTNPLLMFSSRW 258
++ES L++ +G+ S G G+ + E + +H V +PL + + +W
Sbjct: 1010 RVESFLENSMMGLFSFFTESGKGCLAMLGKDALIFESISQKHQCVLSPLSLPTKQW 1065
>01_01_1191 + 9487835-9488467,9492584-9492787
Length = 278
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 123 NCTAFLWRHIVYSKVTGNYSIRYFAI 46
+C A LWRH Y +V + + RY A+
Sbjct: 43 DCVASLWRHRTYDRVRLHLAKRYCAL 68
>08_02_1252 + 25595776-25596564
Length = 262
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 314 HARREVSPRRAHHTPGSHLVLRRRQHR 394
H R VS R HH + L L +R+HR
Sbjct: 168 HRARAVSTLRLHHAASASLPLPQRRHR 194
>02_05_0979 + 33268294-33269595
Length = 433
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 340 PRPSYTWEPPRATSETTP 393
P PS +W PP A S T P
Sbjct: 204 PSPSSSWRPPAAASTTPP 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,206
Number of Sequences: 37544
Number of extensions: 368768
Number of successful extensions: 1301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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