Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1258
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.) 177 4e-45
SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_18934| Best HMM Match : WD40 (HMM E-Value=0.00016) 29 3.0
SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4) 29 4.0
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0) 28 5.3
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11) 28 5.3
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 28 7.0
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 177 bits (432), Expect = 4e-45
Identities = 81/110 (73%), Positives = 93/110 (84%)
Frame = +3
Query: 63 YCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDISAAQIAELEAAV 242
Y YRSPL++RYASKEM Y FS+ KKFSTWR+LW+YLAKAEKELG +ISA QIAE+EA +
Sbjct: 9 YSKYRSPLTSRYASKEMAYCFSEDKKFSTWRRLWLYLAKAEKELGQNISAEQIAEMEANL 68
Query: 243 HDIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNT 392
+ID+ AAE E++ RHDVMAHVHT G CP AAPIIHLGATSCYVGDNT
Sbjct: 69 ENIDYDLAAEEERKRRHDVMAHVHTFGVCCPKAAPIIHLGATSCYVGDNT 118
>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 420 ELLLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDL 572
E LLP L + L + AK++K + +G TH Q A T+G+ S ++ +
Sbjct: 362 ERLLPGLKKLHGALDAKAKEFKDIIKIGRTHTQDATPLTLGQEFSGYVKQI 412
>SB_18934| Best HMM Match : WD40 (HMM E-Value=0.00016)
Length = 206
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 383 SDVARGGSQVYDGRGEGTPLAERVDMRHHVVTNPLLMFSSRWEVDV 246
SD G VYDGRG TPL + H T ++ ++ R+++ V
Sbjct: 2 SDADSGVIHVYDGRGSNTPLH---TLNIHSSTVTVIRYNPRYDIVV 44
>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
Length = 450
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 473 REASKLF-DDGDEPWQKQLESVLKDYQIGV 387
RE ++ F D+GD PWQ++ ++ D +GV
Sbjct: 311 REFTRWFNDEGDVPWQRKCAGMVPDLILGV 340
>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 398
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 LGERCPLAAPIIHLGATSCYVGDNTDLIV-LKNGL 419
LGE C A ++GA C +GDN+ ++ KN L
Sbjct: 305 LGEECRQARVYNNIGAVFCSLGDNSQAMMNFKNAL 339
>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
Length = 905
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 288 EPASHVQQPLGSRCRVQQLLVRLSERRLYPIRAPFQL*P 172
+P H QQ LG C QQL ++L P+R P QL P
Sbjct: 300 KPLRHPQQ-LGLLCHPQQLKPLRHPQQLKPLRHPQQLKP 337
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 28.3 bits (60), Expect = 5.3
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -1
Query: 563 EPQRCSFADRCQLRRL---KMGEAEDGQRLVLFREASKLFDDGDEPWQKQLESVLKDYQI 393
E ++ + D QL+ + K E ++G L REA ++ ++ +LESV ++ Q+
Sbjct: 848 ERKQKEYEDLIQLKDVDVRKAAEEKEGM-LKAMREAFEVASTKKTEYENKLESVRREMQV 906
Query: 392 GVVSDVARGGSQVYDGRGEGTPLAERVDMRH 300
++AR S + + E P RV H
Sbjct: 907 EHERELAREDSVRREMQAEHEPELARVRESH 937
>SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 326 LAERVDMRHHVVTNPLLMFSSRWEVDVVYSSF*FGYLSGAYIQSELLF 183
+ E DMR T P LMFS R V+Y+++ ++ G + S+ LF
Sbjct: 290 ITEVPDMRSDPRTYPSLMFSDR---PVIYTAWLSIFILGGFFVSQCLF 334
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 381 RRSTRWLPGV*WARRGDTSRRACGHAPSRRDEPASHVQQP 262
RR R++ W RG SRRAC AP+ ASH QP
Sbjct: 610 RRKRRFVSCSRWWPRGRASRRAC--APTM--PKASHTHQP 645
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 309 HAPSRRDEPASHVQQPLGSRCRVQQLLVRLSERRLYPIRAP 187
H P++R PA +PL ++ V L L R L I AP
Sbjct: 390 HRPAQRPLPADRRSEPLSAKTIVSSCLAPLLVRPLETIPAP 430
>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 54 NTEYCNYRSPLSTRYASKEMQYNFSDQKKFST 149
NTEY Y + +T Y ++ ++YN +++T
Sbjct: 130 NTEYTEYNTEYNTEYNTEYIEYNTEYNTEYNT 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,184,965
Number of Sequences: 59808
Number of extensions: 386902
Number of successful extensions: 1156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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