Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1258
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...   161   5e-40
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...   161   5e-40
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    29   2.7  
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    29   2.7  
Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical...    29   3.5  
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical ...    28   4.7  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score =  161 bits (390), Expect = 5e-40
 Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)
 Frame = +3

Query: 72  YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DISAAQIAELEAAVH 245
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  ++   I E+++   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 246 DIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNTDLIVLKNGLEL 425
             D+P     E++++HDVMAH H  G+ CP AA IIHLGATSC+V DN DLI  ++ ++ 
Sbjct: 67  VFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDH 126

Query: 426 LLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDLLMDERALSRAK 605
           +L R   VI +L +F+ + K +  +G TH Q A L TVGKR  LW  +LLM  ++LS  +
Sbjct: 127 ILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFR 186

Query: 606 DDLGF 620
           D + F
Sbjct: 187 DKMRF 191


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score =  161 bits (390), Expect = 5e-40
 Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 2/185 (1%)
 Frame = +3

Query: 72  YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DISAAQIAELEAAVH 245
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  ++   I E+++   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 246 DIDFPAAAEHEKRVRHDVMAHVHTLGERCPLAAPIIHLGATSCYVGDNTDLIVLKNGLEL 425
             D+P     E++++HDVMAH H  G+ CP AA IIHLGATSC+V DN DLI  ++ ++ 
Sbjct: 67  VFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDH 126

Query: 426 LLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDLLMDERALSRAK 605
           +L R   VI +L +F+ + K +  +G TH Q A L TVGKR  LW  +LLM  ++LS  +
Sbjct: 127 ILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFR 186

Query: 606 DDLGF 620
           D + F
Sbjct: 187 DKMRF 191


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 111 MQYNFS--DQKKFSTWRKLWIYLAKAEKELGLDISAAQIAELEAAVHDID 254
           M YN S  D ++ +TW+K W   A+ EK    ++S++   + E  V +ID
Sbjct: 1   MDYNLSTDDFEECATWQKYWNLTAELEKNKDRNLSSSG-NDTEDVVSEID 49


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 426 LLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDL 572
           LLP L  +   L + A+++K +  +G TH Q A   T+G+  S ++  L
Sbjct: 25  LLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQL 73


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 426 LLPRLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDL 572
           LLP L  +   L + A+++K +  +G TH Q A   T+G+  S ++  L
Sbjct: 198 LLPALKKLRTALHNKAEEFKDIIKIGRTHTQDAVPLTLGQEFSAYVTQL 246


>Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -3

Query: 327 SRRACGHAPSRRDEPASHVQQPLGSRCRVQQLLVRLSERRLYPIRAPFQL*PNKSRVYAK 148
           S++A    P R   PA     PLG     Q+   +L+   L   +A F L   K R Y  
Sbjct: 528 SQQAVATGPKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYL- 586

Query: 147 SKISF 133
           SK+SF
Sbjct: 587 SKVSF 591


>Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1b protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -3

Query: 327 SRRACGHAPSRRDEPASHVQQPLGSRCRVQQLLVRLSERRLYPIRAPFQL*PNKSRVYAK 148
           S++A    P R   PA     PLG     Q+   +L+   L   +A F L   K R Y  
Sbjct: 25  SQQAVATGPKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYL- 83

Query: 147 SKISF 133
           SK+SF
Sbjct: 84  SKVSF 88


>AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -3

Query: 327 SRRACGHAPSRRDEPASHVQQPLGSRCRVQQLLVRLSERRLYPIRAPFQL*PNKSRVYAK 148
           S++A    P R   PA     PLG     Q+   +L+   L   +A F L   K R Y  
Sbjct: 528 SQQAVATGPKRAHIPAWLGASPLGRTSMTQEFDGQLAALELACAKATFPLDSEKPRNYL- 586

Query: 147 SKISF 133
           SK+SF
Sbjct: 587 SKVSF 591


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 314 HARREVSPRRAHHTPGSHLVLRRRQH 391
           H+   +SP RAHH P   + + RR H
Sbjct: 106 HSCHSMSPLRAHHCPVCDVCILRRDH 131


>AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical
           protein Y119C1A.1 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 304 RMSTRSARGVPSPRPSYTWEPPRATSE 384
           R+  +SA+GVP PRP     PPR+ S+
Sbjct: 181 RLRAKSAKGVPPPRP----PPPRSISQ 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,012
Number of Sequences: 27780
Number of extensions: 291344
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)