Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1258
(620 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 4.2
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.2
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 22 5.5
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 7.3
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 7.3
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 7.3
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 7.3
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 7.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 7.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 7.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 7.3
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 7.3
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 7.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 21 7.3
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 7.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.7
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.0 bits (47), Expect = 2.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 87 SKVTGNYSIRYFAIQQGRQLWSFYRIY 7
S ++ +YS R I++G+ +W + Y
Sbjct: 299 SIMSRHYSTRAIVIEKGQSIWDYDSTY 325
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 4.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 189 ELGLDISAAQIAELEAAVHDIDFPAAAEHEKRVRHDVMAHVHTLGERCPL 338
E L ++A AE+E + IDF A VR + + V L + PL
Sbjct: 299 ETVLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLKDGKPL 348
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y+I + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYEIRRIREIEKLGSE 78
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 21.8 bits (44), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 601 ARDKARSSISKSLSHSDALLPTVVS 527
ARDK S KSL+ + L VVS
Sbjct: 209 ARDKTGGSAKKSLTEYNNLKAMVVS 233
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 7.3
Identities = 9/45 (20%), Positives = 26/45 (57%)
Frame = -1
Query: 491 QRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQ 357
+RL REA + + + Q+ ++ ++ +Y++ + ++ + GS+
Sbjct: 34 ERLQHRREAWLIQQEREREHQRLMKKMILEYELRRIREIEKLGSE 78
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 99 ASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDISAAQI 221
A + Y ++ RK W+YL +A E ++ Q+
Sbjct: 709 ALDRLHYETDPCVRYYPRRKEWLYLHRARSESEFEMYHQQL 749
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,046
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 23
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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