Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1258
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden... 56 2e-08
At4g18440.1 68417.m02736 adenylosuccinate lyase, putative / aden... 52 2e-07
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 30 1.1
At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20, ... 29 3.3
At5g52280.1 68418.m06488 protein transport protein-related low s... 27 7.6
At3g12480.1 68416.m01553 transcription factor, putative 27 7.6
At1g26850.3 68414.m03275 dehydration-responsive family protein s... 27 7.6
At1g26850.2 68414.m03274 dehydration-responsive family protein s... 27 7.6
At1g26850.1 68414.m03273 dehydration-responsive family protein s... 27 7.6
At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containi... 27 7.6
>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
adenylosuccinase, putative similar to SP|P25739
Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
{Escherichia coli}; contains Pfam profile PF00206: Lyase
Length = 527
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Frame = +3
Query: 276 EKRVRHDVMAHVHTLGERC---PLAAPII---HLGATSCYVGDNTDLIVLKNGLE-LLLP 434
E+ HDV A + L ++C P A ++ H TS + + + ++L+ L ++LP
Sbjct: 150 ERVTNHDVKAVEYFLKQKCESHPEIAKVLEFFHFACTSEDINNLSHALMLQEALSSVILP 209
Query: 435 RLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDLLMDERALSRAK 605
+ +IK + AK + +P+L TH QPA TT+GK +++ L ++ R LS K
Sbjct: 210 TMDELIKSISLMAKSFAYVPMLSRTHGQPASPTTLGKEMAIFAVRLSVERRYLSETK 266
>At4g18440.1 68417.m02736 adenylosuccinate lyase, putative /
adenylosuccinase, putative similar to SP|P25739
Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
{Escherichia coli}; contains Pfam profile PF00206: Lyase
Length = 536
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Frame = +3
Query: 276 EKRVRHDVMAHVHTLGERC---PLAAPII---HLGATSCYVGDNTDLIVLKNGLE-LLLP 434
E+ HDV A + L ++C P A ++ H TS + + + ++L+ L ++LP
Sbjct: 159 ERVTNHDVKAVEYFLKQKCESQPEIAKVLEFFHFACTSEDINNLSHALMLQEALSSVILP 218
Query: 435 RLVAVIKQLGSFAKQYKSLPILGFTHLQPAQLTTVGKRASLWLNDLLMDERALSRAK 605
+ +IK + AK + +P+L TH QPA TT+GK + + L + R LS K
Sbjct: 219 TMDELIKSISLIAKNFAYVPMLSRTHGQPATPTTLGKEMANFAVRLSEERRYLSETK 275
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -1
Query: 527 LRRLKMGEAEDGQRLVLFREASKLFDDGDEPWQKQLESVLKDYQIGVVSDVARGGSQVYD 348
L L M ++ ++ E S LF+D + ++ + + + R +Q YD
Sbjct: 159 LEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLPDSLAPHTEAQLLRSQAQRYD 218
Query: 347 GRGEGTPLAERVDM 306
RG G PL R+ M
Sbjct: 219 DRGSGPPLVRRMFM 232
>At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20,
putative contains Pfam profile: PF01649 ribosomal
protein S20
Length = 202
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 619 NPRSSLA-RDKARSSISKSLSHSDALLPTVVSCAG*RWVKPRMGKDLYCFAKLPS 458
+P SS + R A +++S SLS S ++ V G WV+ M + + C A P+
Sbjct: 30 SPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQKPMRQLIVCEAAAPT 84
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/96 (19%), Positives = 43/96 (44%)
Frame = +3
Query: 15 DKMTTIDAPVELQNTEYCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKEL 194
+K T + ++LQ T+ N L+ R ++ ++ + S+ L K E+
Sbjct: 361 EKDLTSNLKLQLQRTQESNSNLILAVRDLNEMLEQK---NNEISSLNSLLEEAKKLEEHK 417
Query: 195 GLDISAAQIAELEAAVHDIDFPAAAEHEKRVRHDVM 302
G+D +I L+ + D+D+ + +K +++
Sbjct: 418 GMDSGNNEIDTLKQQIEDLDWELDSYKKKNEEQEIL 453
>At3g12480.1 68416.m01553 transcription factor, putative
Length = 293
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 471 AKQYKSLPILGFTHLQPAQLTTVGKR 548
+++Y P++ + + PAQL ++GKR
Sbjct: 256 SEEYSGWPMMDISKMDPAQLASLGKR 281
>At1g26850.3 68414.m03275 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 506
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 452 DDGDEPWQKQLESVLKDYQIGVVSDVARGGS-QVYDGRGEGTP 327
DD D+ W K++E+ + Y SD GG Q + R P
Sbjct: 380 DDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVP 422
>At1g26850.2 68414.m03274 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 452 DDGDEPWQKQLESVLKDYQIGVVSDVARGGS-QVYDGRGEGTP 327
DD D+ W K++E+ + Y SD GG Q + R P
Sbjct: 380 DDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVP 422
>At1g26850.1 68414.m03273 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 616
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 452 DDGDEPWQKQLESVLKDYQIGVVSDVARGGS-QVYDGRGEGTP 327
DD D+ W K++E+ + Y SD GG Q + R P
Sbjct: 380 DDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVP 422
>At1g20910.1 68414.m02618 ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Chain A, Human Mrf-2 Domain
[Homo sapiens] GI:14278238; contains Pfam profile
PF01388: ARID/BRIGHT DNA binding domain
Length = 398
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 100 PPKKCSTISVTKRNF 144
PPK C+T+S T RNF
Sbjct: 170 PPKTCTTVSYTFRNF 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,684
Number of Sequences: 28952
Number of extensions: 278259
Number of successful extensions: 904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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