Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1257
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   3.6  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.6  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.6  
Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 333 PSRITPFNPFQIPLLNTIIL 392
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 333 PSRITPFNPFQIPLLNTIIL 392
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 333 PSRITPFNPFQIPLLNTIIL 392
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z81540-8|CAB04407.2|  326|Caenorhabditis elegans Hypothetical
           protein F46B3.11 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
 Frame = +3

Query: 342 ITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK----QRLFLTILLGFYFTIL 509
           IT F P    +  +++ I   ++V  + H       S  K    Q L + IL   YF +L
Sbjct: 186 ITIFIPIGFLISTSLLYIPIMISVRKSSHLPSAQQCSPEKYILAQTLIVLILKLVYFEVL 245

Query: 510 QAYEYIEASFTIADRIYGSTFFIATGFHGIHV----IIGNFISINLLYSTFK*SLFLKII 677
             Y ++  +F+I  RI GS   I      + +    +  N  ++N L+S+FK + F+KI+
Sbjct: 246 FEY-FLNPNFSIF-RITGSPQSIDMVSTPLIIQMSYLFSNKRNVNALFSSFKLNKFMKIM 303


>Z92782-10|CAE17812.1|  377|Caenorhabditis elegans Hypothetical
           protein F14F8.10 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +3

Query: 570 FFIATGFHGIHVIIGN---FISINLLYSTFK*SLFLKIITL 683
           FFIAT FHG+ + IG    F+S  L +   K S+F  ++++
Sbjct: 293 FFIATAFHGV-LYIGKYIVFMSAGLSFIIEKLSMFFTLLSI 332


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 428 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 517
           LID + LL NKT   F YF    F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648


>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 586 PVAMKKVDP*ILSAIVKEASIYSYA 512
           P  +KK+DP I++ I  + S YSY+
Sbjct: 170 PWRLKKIDPKIITGITVDRSYYSYS 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,932,826
Number of Sequences: 27780
Number of extensions: 196288
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)