Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1256
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   0.96 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.1  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.0  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 555 ICRLPLKKSVCTSFEESISLECSLMKL-STAVLASPSSFLFL 433
           +C++ L  S+CTS   + SL+  L KL S  +L +P + L L
Sbjct: 501 VCQIILYSSICTSCSINESLKTKLPKLISFGLLLNPDALLRL 542


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
 Frame = +2

Query: 170 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGE--ISRDGS 331
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   + +  
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQV 659

Query: 332 VQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEID 508
             +L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ + 
Sbjct: 660 TWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLS 719

Query: 509 SSKLV 523
           SS+ V
Sbjct: 720 SSQSV 724


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 443  KLEGDAKTAVDNFIKEHSKEIDSSK 517
            K+EGDAKT  DN +++  K  D  K
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK 1330


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 80  NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 238
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 402 SPIKCSSGSSL-ETRSLKATLKLLSIISSRSTPKR*TLRNLCIPIFS 539
           +P K ++ + L E +SLK T K LS ISS S  K     N   P+FS
Sbjct: 150 NPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKK---ANNSSKPLFS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,888
Number of Sequences: 5004
Number of extensions: 45224
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)