Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1256
(626 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08) 39 0.004
SB_21941| Best HMM Match : Kinesin (HMM E-Value=0) 31 0.58
SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05) 30 1.8
SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_32038| Best HMM Match : ILVD_EDD (HMM E-Value=3.50002e-41) 29 3.1
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0) 29 4.1
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05) 29 4.1
SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) 29 4.1
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6) 29 4.1
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1) 27 9.4
>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
Length = 418
Score = 38.7 bits (86), Expect = 0.004
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Frame = +2
Query: 50 GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD----VVKVKN 208
G C + V N+T+Y G WY++ S F E E+N C +A+Y L D VV
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGKIGVVNSNR 292
Query: 209 VHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQIL 343
DG K I G A D KL V F + +GS IL
Sbjct: 293 DKKPDGELKQITGYA-YQPDPEVPGKLKV--HFDTVPVEGSYWIL 334
>SB_21941| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 791
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/110 (19%), Positives = 42/110 (38%)
Frame = +2
Query: 134 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGE 313
N + G+ + EY L +++ N I D + K ++ + +K +
Sbjct: 397 NSMQGKGRRRNREYLLHVSYLEIYNEEIRDLLVKNTRSNLEIKEHPDKGMYVKGLSSITV 456
Query: 314 ISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAK 463
+ +IL N ++ C D +SH +F+ L N G+ +
Sbjct: 457 DCYEDMAEILEIGSANRSVGSTCMNTDSSRSHSIFIIDLQVNVNKGGEGE 506
>SB_21384| Best HMM Match : 7tm_1 (HMM E-Value=8.6e-05)
Length = 442
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 126 NFPTNLRRTANALQLNTNWKVTW*RSRTCISSTASRSI*KGR 251
NF T +AL++ W VTW R C +T S + GR
Sbjct: 33 NFLTLFVFATDALRIRRFWGVTWWRDTRCSRATTSNCLKTGR 74
>SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 425 ILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFF 538
+++ ++ D+K+ +D+F+ +I+SS ++H D F
Sbjct: 166 LINEPTRITIDSKSLIDHFVTSSPDKINSSGVIHIDLF 203
>SB_32038| Best HMM Match : ILVD_EDD (HMM E-Value=3.50002e-41)
Length = 508
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 592 CFPCSVITLELVNLQASSEKIGMHKFRRVYLFGVLLD-EIIDSSFSVA 452
CFPC V+ + LQ S+++ H + + GV+ D E +D+ S+A
Sbjct: 30 CFPCLVVIVFPKCLQKVSKELADHVVKAIESEGVISDAETMDAIISLA 77
>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
Length = 1013
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 305 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 436
FGE ++GS+ + A ++A A Y D+K Q W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547
>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
Length = 264
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 305 FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 436
FGE ++GS+ + A ++A A Y D+K Q W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245
>SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)
Length = 509
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = +2
Query: 425 ILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFFRGSLQIYQLQRDN 577
+++ ++ D+K+ +D+F+ +I+SS ++H SL IY ++++N
Sbjct: 458 LINEPTRITIDSKSLIDHFVTSSPDKINSSGVIHIGPSEHSL-IYGIRKEN 507
>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
Length = 395
Score = 28.7 bits (61), Expect = 4.1
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Frame = +2
Query: 248 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QILATDYNNYAIAYNCKYDDKKKSHQVF 418
T ++T+ + + FK EIS+ G+V +++ATD + I + K + + HQ
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187
Query: 419 VWILSRN--KKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFFRGSLQIYQ 562
VW ++++ KKL AK N + K + + GS ++ Q
Sbjct: 188 VWHMAKSVTKKLTEAAKKKDTNDLLPWIKSVSNHLWWCASACEGSSELLQ 237
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 27.9 bits (59), Expect = 7.1
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Frame = +2
Query: 62 ELKPVNNFN-LTAYQGIWYEISKFPNESEKNGKCSSAEYKLE-GDVVKVKNV--HIIDGV 229
++ P+N + + AY I Y+I K ++ E +GK + ++ G++ K + +I+
Sbjct: 592 KVTPLNKVDEIAAYHNICYDIGK--SKGECDGKMVESLDRIPYGEMPKWGSTARFLINAK 649
Query: 230 KKYIEGTAKLTDDANKAAKLTVTF--KF------GEISRDGSVQILATDYNNYAIAYNCK 385
+K G K + ++ K+ F KF G +S D V + + NNY + +
Sbjct: 650 RKLGLGVKKPKNGKSRRVKICSGFAIKFKSPKESGRLSDDQQVMLQSNKDNNYKVMASND 709
Query: 386 YDD 394
YD+
Sbjct: 710 YDE 712
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 425 ILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFFRGSLQIYQLQRDN 577
+L+ ++ +K+ +D+F+ K+I+SS ++H SL IY +++ N
Sbjct: 364 LLNEPTRITMHSKSLIDHFVTSCPKKINSSGVIHLGLSDHSL-IYGIRKIN 413
>SB_48642| Best HMM Match : EFG_IV (HMM E-Value=7.1)
Length = 508
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 116 EISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVK 232
E+ ++ ESE+NGK SS + + V +K + + DG K
Sbjct: 38 EVFEWRFESEENGKMSSV-MTIHSNTVPLKEIGLWDGAK 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,501
Number of Sequences: 59808
Number of extensions: 337559
Number of successful extensions: 958
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -