Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1256
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.11 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -2

Query: 274 IGIVGELGRPFY---ILLDAVDDMHVLDLHHVTFQFVFS*RAF 155
           +G + E+ R FY   + ++ V +  + D  HVTF+  F  RAF
Sbjct: 145 MGQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAF 187


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 137 RWEISRFHTRC--LGKLSS*SCSPVSARGRCLRE*LQQS 27
           RW++ +FH  C  +G  S  S   V A GR   E  Q++
Sbjct: 186 RWDLGKFHRVCTQIGS-SMKSVGEVMAIGRKFEEAFQKA 223


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 356 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 448
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 446 LEGDAKTAVDNFIKEHSKEIDSSKLVHTDFFRGSLQ 553
           L+GD +  V+  I + S  I   KLV     RG+L+
Sbjct: 312 LKGDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLK 347


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 356 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 448
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  VEVVHRFQLGAGAFVNNFSSRRRKQSQ 8
           VEV     LG+G ++++F    RK  Q
Sbjct: 255 VEVDQLSWLGSGQYISDFVGSCRKTDQ 281


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 88  VEVVHRFQLGAGAFVNNFSSRRRKQSQ 8
           VEV     LG+G ++++F    RK  Q
Sbjct: 293 VEVDQLSWLGSGQYISDFVGSCRKTDQ 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,456
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)