Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1256
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58070.1 68418.m07267 lipocalin, putative similar to temperat... 56 1e-08
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 31 0.63
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 30 1.1
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 29 1.9
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s... 29 3.3
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 29 3.3
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 29 3.3
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 29 3.3
At5g36740.1 68418.m04402 PHD finger family protein 28 4.4
At5g36670.1 68418.m04388 PHD finger family protein 28 4.4
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative... 28 4.4
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 7.7
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 27 7.7
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 27 7.7
>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
stress-induced lipocalin [Triticum aestivum] GI:18650668
Length = 186
Score = 56.4 bits (130), Expect = 1e-08
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Frame = +2
Query: 62 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 235
E++ V N+ Y G WYEI+ FP+ + KNG + A Y L D + V N +G +
Sbjct: 6 EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65
Query: 236 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQV 415
+IEG+A D + AKL V F + + DY I + ++ + +
Sbjct: 66 FIEGSAYKADPKSDEAKLKVKFYVPPFL---PIIPVTGDYWVLYIDPDYQHALIGQPSRS 122
Query: 416 FVWILSRNKKLEGDA-KTAVDNFIKE 490
++WILSR ++E + K V+ ++E
Sbjct: 123 YLWILSRTAQMEEETYKQLVEKAVEE 148
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 143 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 322
EK+GK SS K + + V+ ++D +++ E L K++K T K ++
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKTK--KKDSLNI 572
Query: 323 DGSVQILATDYNNYA 367
Q+L+ + NN A
Sbjct: 573 VEEAQVLSVEVNNVA 587
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/130 (19%), Positives = 57/130 (43%)
Frame = +2
Query: 143 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISR 322
EK+GK SS K + + V+ ++D +++ E L K++K + K ++
Sbjct: 665 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKRSK--KKDSLNI 722
Query: 323 DGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKE 502
Q+L+ + NN A ++ K + +F + K ++ + +++++
Sbjct: 723 VEEAQVLSVEVNNVAQEEASPINNPKDTDALFTPAKKNTESNASPLKKIIE--VTDNTED 780
Query: 503 IDSSKLVHTD 532
I+ S V +
Sbjct: 781 INRSMQVQKE 790
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 74 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 211
V NFN++ + G WY I+ N + C E+ EGD V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248
>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
similar to SP|P04051 DNA-directed RNA polymerase III
largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
contains InterPro accession IPR000722: RNA polymerase,
alpha subunit
Length = 1328
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 236 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIA 373
Y + ++ KA F G ++DG IL DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 443 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 526
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 443 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 526
+L+G K V F+KEH+ + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 431 SRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFFRGSLQ---IYQLQRDN 577
S N K E TAVD + E KEI SK DFFR +Q +Y+ + DN
Sbjct: 593 SLNTKFE--EATAVDKKVDELEKEIADSK-QKIDFFRAKMQELVLYKSRCDN 641
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 158 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 265
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 158 CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 265
C Y EGD + N+ ++DG + E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069
>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 345
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +2
Query: 119 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 217
+S FP ES+ + K ++ E+KL G + V VKN+++
Sbjct: 14 VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 431 SRNKKLEGDAKTAVDNFIKEHSKE 502
+R +K EG+ TA I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 182 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 358
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 91 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 148
Query: 359 N 361
N
Sbjct: 149 N 149
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 182 EGDVVKVKNVHIIDGVK-KYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQILATDYN 358
EGDV++VKN+ ++ G K T D +N A L T + G + YN
Sbjct: 59 EGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDT--IMVPYN 116
Query: 359 N 361
N
Sbjct: 117 N 117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,310
Number of Sequences: 28952
Number of extensions: 235728
Number of successful extensions: 774
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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