BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1254 (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.0 SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 2.7 SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.7 SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 4.7 SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 6.2 SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 6.2 >SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1461 Score = 27.5 bits (58), Expect = 2.0 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +2 Query: 194 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 295 K+EGDAKT DN +++ K D K D++EE Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336 >SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 642 Score = 27.1 bits (57), Expect = 2.7 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +2 Query: 599 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGTVILFVGAI 715 LPI+ S + F++I+ T +G T FQ + +GA+ Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380 >SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Phf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 538 Score = 26.2 bits (55), Expect = 4.7 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 245 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 343 +KEI+SSK TD E FT + + + H Sbjct: 96 AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128 >SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 274 Score = 26.2 bits (55), Expect = 4.7 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 620 VKSSLLVDKNPKKYSCDLKKSHKRKSV 540 ++ L + K+ DL+KSHKRKSV Sbjct: 138 IEEGELTSEEEKEPIQDLRKSHKRKSV 164 >SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosaccharomyces pombe|chr 3|||Manual Length = 343 Score = 25.8 bits (54), Expect = 6.2 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = +1 Query: 535 LKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLDID 654 L+ +R+WD S + F S+ ++ +F K D+D Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237 >SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 559 DFLRSQEYFFGFLSTNKELFTNLFHSN 639 +FLR E + S NKEL +NL S+ Sbjct: 681 EFLRKMEVYNNQFSKNKELCSNLLSSS 707 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,804,686 Number of Sequences: 5004 Number of extensions: 55302 Number of successful extensions: 157 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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