Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1254
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    29   4.9  
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    29   4.9  

>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 128 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 229
           +CK D     H  +  +   N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 476 ISVIGW-LWSLQSGSTNKTKPYANLNTVVTIQFDSPQCFKYLFSLNVFRVRLSRW 315
           +S   W LW++  G   +  P   LNT + I F + QCF    +L + R   SRW
Sbjct: 150 LSTTCWALWTVLQGPMLEVYPSKLLNTTIQIVFATIQCF--FIALAIER-DFSRW 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,032,297
Number of Sequences: 37544
Number of extensions: 308712
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)