Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1254
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   5.0  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              29   5.0  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    28   8.8  

>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 56  FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 187
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 547


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 56  FGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSR 187
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSK 245


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 550 RLWDFLRSQEYFFGFLSTNKELFTNLFH 633
           RLWD  R+  Y+  F++ N  +FT  +H
Sbjct: 403 RLWDMRRTDTYYHQFMAHNGPVFTLDWH 430


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +2

Query: 62  EISRDGSV-QILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRN--KKLEGDAKTAVDNF 232
           EIS+ G+V +++ATD  +  I  + K +  +  HQ  VW ++++  KKL   AK    N 
Sbjct: 152 EISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFDVWHMAKSVTKKLTEAAKKKDTND 210

Query: 233 IKEHSKEIDSSKLVHTDFSEEACKFTS 313
           +    K + +    H  +   AC+ +S
Sbjct: 211 LLPWIKSVSN----HLWWCASACEGSS 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,064,326
Number of Sequences: 59808
Number of extensions: 375656
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)