Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1254
         (719 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070838-1|AAL48460.2|  227|Drosophila melanogaster GH09946p pro...    42   0.001
AF276506-1|AAF85708.1|  212|Drosophila melanogaster glial Lazari...    42   0.001
AE013599-1646|AAF58418.1|  212|Drosophila melanogaster CG4604-PA...    42   0.001
AY084185-1|AAL89923.1|  224|Drosophila melanogaster RE67583p pro...    36   0.042
AF276505-1|AAF85707.1|  224|Drosophila melanogaster neural Lazar...    36   0.042
AE014134-249|AAF51378.2|  224|Drosophila melanogaster CG33126-PA...    36   0.042
U07629-1|AAA21249.2| 1494|Drosophila melanogaster beta-heavy-spe...    33   0.52 
AY119626-1|AAM50280.1| 1025|Drosophila melanogaster LP04011p pro...    33   0.52 
AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA...    33   0.52 
AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB...    33   0.52 
AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC...    33   0.52 
BT023811-1|AAZ66318.1|  971|Drosophila melanogaster LP23835p pro...    31   1.2  
AE013599-3891|AAF47220.2|  947|Drosophila melanogaster CG30169-P...    31   1.2  

>AY070838-1|AAL48460.2|  227|Drosophila melanogaster GH09946p
           protein.
          Length = 227

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +2

Query: 77  GSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEI 256
           G  Q+L TDY N+AI ++C        H   +WIL R++  E D ++ V + +K  S  +
Sbjct: 154 GKYQVLYTDYENFAILWSCG-SIGSLGHSDQIWILGRDRDFEVDIRSKVYDVLKRLS--L 210

Query: 257 DSSKLV 274
           D  +L+
Sbjct: 211 DPERLI 216


>AF276506-1|AAF85708.1|  212|Drosophila melanogaster glial Lazarillo
           protein.
          Length = 212

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +2

Query: 77  GSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEI 256
           G  Q+L TDY N+AI ++C        H   +WIL R++  E D ++ V + +K  S  +
Sbjct: 139 GKYQVLYTDYENFAILWSCG-SIGSLGHSDQIWILGRDRDFEVDIRSKVYDVLKRLS--L 195

Query: 257 DSSKLV 274
           D  +L+
Sbjct: 196 DPERLI 201


>AE013599-1646|AAF58418.1|  212|Drosophila melanogaster CG4604-PA
           protein.
          Length = 212

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +2

Query: 77  GSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEI 256
           G  Q+L TDY N+AI ++C        H   +WIL R++  E D ++ V + +K  S  +
Sbjct: 139 GKYQVLYTDYENFAILWSCG-SIGSLGHSDQIWILGRDRDFEVDIRSKVYDVLKRLS--L 195

Query: 257 DSSKLV 274
           D  +L+
Sbjct: 196 DPERLI 201


>AY084185-1|AAL89923.1|  224|Drosophila melanogaster RE67583p
           protein.
          Length = 224

 Score = 36.3 bits (80), Expect = 0.042
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 89  ILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSK 268
           +L TDY +YA+ Y+C       + ++ VWIL+R ++   +A  A    ++++  ++  + 
Sbjct: 126 VLGTDYESYAVVYSCTSVTPLANFKI-VWILTRQREPSAEAVDAARKILEDN--DVSQAF 182

Query: 269 LVHT 280
           L+ T
Sbjct: 183 LIDT 186


>AF276505-1|AAF85707.1|  224|Drosophila melanogaster neural
           Lazarillo protein.
          Length = 224

 Score = 36.3 bits (80), Expect = 0.042
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 89  ILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSK 268
           +L TDY +YA+ Y+C       + ++ VWIL+R ++   +A  A    ++++  ++  + 
Sbjct: 126 VLGTDYESYAVVYSCTSVTPLANFKI-VWILTRQREPSAEAVDAARKILEDN--DVSQAF 182

Query: 269 LVHT 280
           L+ T
Sbjct: 183 LIDT 186


>AE014134-249|AAF51378.2|  224|Drosophila melanogaster CG33126-PA
           protein.
          Length = 224

 Score = 36.3 bits (80), Expect = 0.042
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 89  ILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSK 268
           +L TDY +YA+ Y+C       + ++ VWIL+R ++   +A  A    ++++  ++  + 
Sbjct: 126 VLGTDYESYAVVYSCTSVTPLANFKI-VWILTRQREPSAEAVDAARKILEDN--DVSQAF 182

Query: 269 LVHT 280
           L+ T
Sbjct: 183 LIDT 186


>U07629-1|AAA21249.2| 1494|Drosophila melanogaster
           beta-heavy-spectrin protein.
          Length = 1494

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 146 KKKSHQVFVWILSRNKKLE----GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
           K +  QV +W+ ++   L     GD+ TAV+  +K+H    +  KL+H D  +   KF +
Sbjct: 77  KAQVEQVEIWLANKEAFLNNDDLGDSYTAVERLLKKHD---EFEKLLHADHVDTLQKFAN 133

Query: 314 S 316
           S
Sbjct: 134 S 134


>AY119626-1|AAM50280.1| 1025|Drosophila melanogaster LP04011p
           protein.
          Length = 1025

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 146 KKKSHQVFVWILSRNKKLE----GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
           K +  QV +W+ ++   L     GD+ TAV+  +K+H    +  KL+H D  +   KF +
Sbjct: 308 KAQVEQVEIWLANKEAFLNNDDLGDSYTAVERLLKKHD---EFEKLLHADHVDTLQKFAN 364

Query: 314 S 316
           S
Sbjct: 365 S 365


>AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA,
            isoform A protein.
          Length = 4097

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 146  KKKSHQVFVWILSRNKKLE----GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
            K +  QV +W+ ++   L     GD+ TAV+  +K+H    +  KL+H D  +   KF +
Sbjct: 2680 KAQVEQVEIWLANKEAFLNNDDLGDSYTAVERLLKKHD---EFEKLLHADHVDTLQKFAN 2736

Query: 314  S 316
            S
Sbjct: 2737 S 2737


>AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB,
            isoform B protein.
          Length = 4118

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 146  KKKSHQVFVWILSRNKKLE----GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
            K +  QV +W+ ++   L     GD+ TAV+  +K+H    +  KL+H D  +   KF +
Sbjct: 2680 KAQVEQVEIWLANKEAFLNNDDLGDSYTAVERLLKKHD---EFEKLLHADHVDTLQKFAN 2736

Query: 314  S 316
            S
Sbjct: 2737 S 2737


>AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC,
            isoform C protein.
          Length = 4207

 Score = 32.7 bits (71), Expect = 0.52
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 146  KKKSHQVFVWILSRNKKLE----GDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
            K +  QV +W+ ++   L     GD+ TAV+  +K+H    +  KL+H D  +   KF +
Sbjct: 2680 KAQVEQVEIWLANKEAFLNNDDLGDSYTAVERLLKKHD---EFEKLLHADHVDTLQKFAN 2736

Query: 314  S 316
            S
Sbjct: 2737 S 2737


>BT023811-1|AAZ66318.1|  971|Drosophila melanogaster LP23835p
           protein.
          Length = 971

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
 Frame = +2

Query: 14  DDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNK 193
           D+++  A   +   + E + +  V+++ +D+ +   +     D+ + SH+   W   RNK
Sbjct: 68  DNSDFVAVEDLILSYAEPTPEDQVEMIMSDFCS---SPTYAEDEDEPSHESEPWFRFRNK 124

Query: 194 KL-----EGDAKT--AVDNFIKEHSKEIDSSKLVHTDFSEEACKFTSSS 319
           ++     + D K+  AV N  +  S  +   + ++T F+  AC F +SS
Sbjct: 125 RIRTYSRKRDPKSHKAVQNEKRRGSSGLSVQRDLNTSFTSMACDFDASS 173


>AE013599-3891|AAF47220.2|  947|Drosophila melanogaster CG30169-PA
           protein.
          Length = 947

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
 Frame = +2

Query: 14  DDANKAAKLTVTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNK 193
           D+++  A   +   + E + +  V+++ +D+ +   +     D+ + SH+   W   RNK
Sbjct: 68  DNSDFVAVEDLILSYAEPTPEDQVEMIMSDFCS---SPTYAEDEDEPSHESEPWFRFRNK 124

Query: 194 KL-----EGDAKT--AVDNFIKEHSKEIDSSKLVHTDFSEEACKFTSSS 319
           ++     + D K+  AV N  +  S  +   + ++T F+  AC F +SS
Sbjct: 125 RIRTYSRKRDPKSHKAVQNEKRRGSSGLSVQRDLNTSFTSMACDFDASS 173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,686,777
Number of Sequences: 53049
Number of extensions: 529356
Number of successful extensions: 1166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)