Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1254
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    34   0.089
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    34   0.089
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    34   0.089
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    29   2.5  
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 35  KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 193
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 35  KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 193
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 35  KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 193
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +2

Query: 482 YFSQFSLMSVRPKILCLR*RQICVYGTF*DRKNIFLDFYLPIRNFSQIYFIVIN*TSMGN 661
           +F   S ++  P++L  R   +    TF  RK IFL+F++P R     Y       S G+
Sbjct: 158 FFGTLSPVAKTPRLLNKRSYVVLKLFTF-QRKTIFLEFWVPPRKLLGTYIASTTQMSPGS 216

Query: 662 ITPTHF 679
               HF
Sbjct: 217 RISYHF 222


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 27/90 (30%), Positives = 40/90 (44%)
 Frame = +2

Query: 44  VTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAV 223
           V  +F E   DG      + Y +YA  +N    +  K  +    I  R + + G A    
Sbjct: 31  VLTEFSESENDG-----LSHYAHYAKFHNYLVPNMAKLAEYS--IEERVRVIFGFAAVVS 83

Query: 224 DNFIKEHSKEIDSSKLVHTDFSEEACKFTS 313
           D+F+K+  +E     LVH D  +  CKFTS
Sbjct: 84  DDFLKQIQRE----GLVHLDKKKRICKFTS 109


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 146 KKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSK 250
           K  S  V+  + SRN+KLE   + A+D+F++  SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 510 FGLKFFAFVKDRFAFMGLFKIARIFFWI 593
           F +KFF F+ +R  F+ +  +  I FW+
Sbjct: 33  FQVKFFRFIDNRSNFIAIIYVGFIHFWV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,204,715
Number of Sequences: 27780
Number of extensions: 293854
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)