Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1254
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   4.1  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   4.1  
At2g30740.1 68415.m03749 serine/threonine protein kinase, putati...    28   7.2  
At1g06700.1 68414.m00712 serine/threonine protein kinase, putati...    28   7.2  
At5g54540.1 68418.m06790 expressed protein                             27   9.5  
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    27   9.5  
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id...    27   9.5  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    27   9.5  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 194 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 277
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 194 KLEGDAKTAVDNFIKEHSKEIDSSKLVH 277
           +L+G  K  V  F+KEH+  + SS ++H
Sbjct: 115 ELQGHEKWVVTKFVKEHTHGLASSNMLH 142


>At2g30740.1 68415.m03749 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
           esculentum] gi|3668069|gb|AAC61805
          Length = 366

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 376 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 224
           P NA+ + S  +   FGYHA      G L      +   VY FGV+L E++
Sbjct: 229 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 274


>At1g06700.1 68414.m00712 serine/threonine protein kinase, putative
           similar to Pto kinase interactor 1 (Pti1)[Lycopersicon
           esculentum] gi|3668069|gb|AAC61805
          Length = 361

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -2

Query: 376 PRNASSIFSVLMFSVFGYHAGAGKFAGFL*KIGMHKFRRVYLFGVLLDEII 224
           P NA+ + S  +   FGYHA      G L      +   VY FGV+L E++
Sbjct: 226 PDNAARLHSTRVLGTFGYHAPEYAMTGQL-----TQKSDVYSFGVVLLELL 271


>At5g54540.1 68418.m06790 expressed protein
          Length = 297

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 487 FAIFPNVSSA*NSLPSLKTDLRLWDFLRSQEYFFGFLSTNKELFTNLFHSNKLD 648
           FA     ++A   + S+ +D ++WD +   +    FL TNK   ++   S+  D
Sbjct: 159 FAFLSENTAAQTVVASIASDPKVWDAVMENKDLMKFLQTNKTAVSSQVESDNDD 212


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -1

Query: 497 KIAKNMVISVIG----WLWSLQSGSTNKTKPYANLNTVVTIQFDS 375
           KI   +V +V      WLWSLQ+ +T  T   + +++   ++++S
Sbjct: 32  KIVSGLVTNVASILWKWLWSLQTSTTTTTTTKSGVSSRSMVKYES 76


>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
           identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
          Length = 485

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 419 VWFYW*NLTVNSIASLLLI*PY-FSQFSLMS 508
           VW  W +   N +A +LL  PY FSQ  ++S
Sbjct: 48  VWDAWFSCASNQVAQVLLTLPYSFSQLGMLS 78


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 SRNKKLEGDAKTAVDNFIKEHSKE 253
           +R +K EG+  TA    I+EHSK+
Sbjct: 548 NRKRKAEGECSTAETESIEEHSKD 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,182
Number of Sequences: 28952
Number of extensions: 272352
Number of successful extensions: 733
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)