BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1250 (727 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-... 23 2.9 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 6.8 >M29490-1|AAA27725.1| 109|Apis mellifera protein ( Bee homeobox-containing gene,partial cds, clone E30. ). Length = 109 Score = 23.0 bits (47), Expect = 2.9 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 598 AEVRYANERRRELNKLDRTGTSVTIKI 678 AE RY ERRR+ D T IKI Sbjct: 40 AENRYLTERRRQQLSRDLGLTEAQIKI 66 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.8 bits (44), Expect = 6.8 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = -2 Query: 192 LKLMRSRKPTNIFLKKTIIFDSLVKENTYKLTSNQECY*NGSVLNY*NSRKVHPTLHNLT 13 LK + S PT + T D NT +L Q NG V+++ N H L Sbjct: 413 LKCVASGNPTP---EITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLY 469 Query: 12 QCV 4 +C+ Sbjct: 470 KCI 472 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 195,340 Number of Sequences: 438 Number of extensions: 3909 Number of successful extensions: 3 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22535775 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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