Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   8.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   8.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   8.8  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/36 (27%), Positives = 12/36 (33%)
 Frame = -1

Query: 357 GIRIGEPESSTGCPRD*AFSTVHGNGPNCVLTQMLG 250
           G  IG PE    C        + G      L  +LG
Sbjct: 123 GKMIGLPEDFLACSGGKGGGVIQGTASEATLVALLG 158


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 170 CNSKITCLRF*MPLRCKID 226
           C+  I+CL+  MP+   ID
Sbjct: 16  CHRYISCLKGKMPIDLVID 34


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 170 CNSKITCLRF*MPLRCKID 226
           C+  I+CL+  MP+   ID
Sbjct: 172 CHRYISCLKGKMPIDLVID 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,823
Number of Sequences: 336
Number of extensions: 1638
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)