Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    73   1e-14
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   1.5  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    25   3.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   6.2  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    24   6.2  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 72.9 bits (171), Expect = 1e-14
 Identities = 40/52 (76%), Positives = 44/52 (84%), Gaps = 3/52 (5%)
 Frame = +1

Query: 166 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           D QFED  +LP ILNALEV+   + RLVLEVAQH+GENTVRTIAMDGTEGLV
Sbjct: 66  DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLV 117



 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RG  V+D+GSPI IP
Sbjct: 118 RGTAVIDTGSPISIP 132


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 47  NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 157
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 223 RSPRLVLEVAQHLGENTVRTIAMD 294
           R+P LVL+ A  LGEN    +  D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 181  DNLPPILNALEVQNRSPRLVLEVAQHLGENTV 276
            D +  I NAL+ Q RSP L  E+   + +N +
Sbjct: 2290 DFVTQISNALQAQLRSPVLSEELGMQVAKNLI 2321


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 178 EDNLPPILNALEVQNRSPRLVLE 246
           +DN+  +L+ALE+QN   +  +E
Sbjct: 59  DDNVETLLSALEIQNEKSKQQVE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,291
Number of Sequences: 5004
Number of extensions: 26197
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)