Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1249
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808 30 0.63
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 29 0.83
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 29 1.5
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135... 29 1.5
11_02_0015 - 7355989-7357092 28 1.9
07_03_0899 + 22421038-22422642 27 3.4
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 27 3.4
10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454 27 4.4
10_04_0010 - 7487455-7489490,7489569-7489980 27 4.4
09_02_0555 - 10588685-10592038 27 4.4
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 27 4.4
03_02_1029 - 13488535-13493037 27 4.4
01_05_0672 + 24177338-24177413,24178596-24179641 27 5.9
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 26 7.7
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 26 7.7
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 26 7.7
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 26 7.7
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 26 7.7
>06_03_0787 + 24598823-24598973,24600213-24600534,24602499-24602808
Length = 260
Score = 29.9 bits (64), Expect = 0.63
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 280 SELCSHPNVGLPQVRGGEIDFAPQGHLE-SEAGYLRIA 170
++ C+ PN+GL GG +F P+ H E SEA +LR+A
Sbjct: 110 TDFCA-PNLGLSDDYGGWCNF-PKEHFEMSEAAFLRVA 145
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 177 ELHIYHSTDNGNNLTLAFSCRF 112
ELH+ H+ +NGN LAF RF
Sbjct: 136 ELHMVHTNENGNITVLAFLYRF 157
>09_02_0625 + 11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +2
Query: 59 NVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MC 172
N E S+ SMP L NL+E AK LLP L+ +C
Sbjct: 920 NAELSINSMPTAS---LSNLEEYAKKSLLPAVALFALC 954
>01_06_0742 -
31611005-31611843,31611930-31612092,31613463-31613538,
31613615-31613731,31613852-31614016,31614100-31614190,
31614824-31614908,31615013-31615195,31615748-31615996
Length = 655
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 271 CSHPNVGLPQVRGGEIDFAPQGHLESEAG 185
C+ P V LP+ RG + + PQGHL S AG
Sbjct: 30 CAGPVVSLPR-RGSAVVYLPQGHL-SAAG 56
>11_02_0015 - 7355989-7357092
Length = 367
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 311 TKPSVPSMAMVRTVFSPKCWATSSTRRGD 225
TKP P ++R WAT +TRR D
Sbjct: 15 TKPKPPMSRLMRLSLKAVDWATDATRRAD 43
>07_03_0899 + 22421038-22422642
Length = 534
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 293 SMAMVRTVFSPKCWATSSTRRGDRFCTSRA 204
S+A V TVFSP W ++ R FC S A
Sbjct: 167 SVAGVLTVFSPNVWVYAALRFVCGFCRSTA 196
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 184 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVR 279
NLPP+L ++ +N + +L+ GEN +R
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLR 2857
>10_07_0032 + 12096290-12097042,12097056-12098066,12110194-12110454
Length = 674
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 319 PTGL--SLQYRPWQWSELCSHPNVGLPQVRGG 230
P GL LQ W+W E+ GLP+ +GG
Sbjct: 323 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 354
>10_04_0010 - 7487455-7489490,7489569-7489980
Length = 815
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 319 PTGL--SLQYRPWQWSELCSHPNVGLPQVRGG 230
P GL LQ W+W E+ GLP+ +GG
Sbjct: 485 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 516
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 319 PTGL--SLQYRPWQWSELCSHPNVGLPQVRGG 230
P GL LQ W+W E+ GLP+ +GG
Sbjct: 742 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 773
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 319 PTGL--SLQYRPWQWSELCSHPNVGLPQVRGG 230
P GL LQ W+W E+ GLP+ +GG
Sbjct: 792 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 823
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 319 PTGL--SLQYRPWQWSELCSHPNVGLPQVRGG 230
P GL LQ W+W E+ GLP+ +GG
Sbjct: 1125 PAGLLQPLQVPEWKWDEIGMDFITGLPKTQGG 1156
>01_05_0672 + 24177338-24177413,24178596-24179641
Length = 373
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 228 RSILHLKGI*NRRQVIFELHIYHSTDNGN 142
R++L I NR +V+F+ YH+ +G+
Sbjct: 320 RAVLEFAAIANRTRVVFQSTFYHTMTDGS 348
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 232 GEIDFAPQGHLESEAGYLRIAHLP 161
G++DFAP H+ + GY + +P
Sbjct: 147 GDVDFAPALHILGQRGYTIVLAIP 170
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 271 CSHPNVGLPQVRGGEIDFAPQGHLE 197
C+ P V +P+ RG + + PQGH+E
Sbjct: 25 CAGPLVTVPK-RGERVYYFPQGHME 48
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 235 LVLEVAQHLGENTVRTIAMDGTEGLVPWA 321
++L H + VR +MDG LVPWA
Sbjct: 256 ILLNKNVHWNDLQVRLPSMDGRVALVPWA 284
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 271 CSHPNVGLPQVRGGEIDFAPQGHLE 197
C+ P LP+ +G + + PQGHLE
Sbjct: 44 CAGPVAPLPR-KGSAVVYLPQGHLE 67
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 262 PNVGLPQVRGGEIDFAPQGHLESEAGYL-RIAHLPQHR*RQQP 137
PN+G P + GG++D + + + L + ++ QH QQP
Sbjct: 393 PNIGSPSLSGGDVDILIKKKIAQQQQLLQQQSNSQQHPQLQQP 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,772,598
Number of Sequences: 37544
Number of extensions: 186178
Number of successful extensions: 484
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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