Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                95   2e-20
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.16 
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   3.5  
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         27   4.6  
SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     26   8.0  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 42/49 (85%), Positives = 49/49 (100%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+
Sbjct: 85  DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLI 133


>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 276 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 106
           NC+L  + GYLK ++   I++  G     QV++ L  +Y S + GNNL   F    +S
Sbjct: 48  NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 192 RQVIFELHIYHSTDNGNNLTLAF 124
           RQ     H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540


>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1540

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 190  PPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVPWATRTR 333
            PP+  A + ++R   +     +  G+   R +AMDG + ++ W  ++R
Sbjct: 1321 PPLAAAQQTKDRPLAVPATALRAPGQCKSRLLAMDGDKKILDWQAQSR 1368


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 175 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGT 300
           F++++ P+LN L +  +S  L L   ++ G N V     +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215


>SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 235 GGEIDFAPQGHLESEAGYLRIAHL 164
           G  ID +P G +E E  +LRI H+
Sbjct: 54  GYVIDVSPDGRVEMEKDHLRITHM 77


>SB_10268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 359 RGYELVSQSLVRVAHGTKPSVPSMAM 282
           R   LVS   VR++HGT  S PS+ +
Sbjct: 319 RSANLVSTPPVRLSHGTSVSTPSICL 344


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 172 QFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTI 285
           Q ED++   LNAL++Q  S    LE  Q + E   R +
Sbjct: 618 QKEDHMVEELNALKIQLNSANTELESTQSMNEKLKRKL 655


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,825,975
Number of Sequences: 59808
Number of extensions: 200336
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)