Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03559-1|CAA27246.1|  539|Homo sapiens protein ( Human mRNA for ...    89   5e-18
M27132-1|AAA51809.1|  529|Homo sapiens ATP synthase beta subunit...    89   5e-18
M19483-1|AAA51808.1|  529|Homo sapiens ATPSB protein.                  89   5e-18
D00022-1|BAA00016.1|  539|Homo sapiens F1 beta subunit protein.        89   5e-18
DQ403107-1|ABD77240.1|  445|Homo sapiens mitochondrial ATP synth...    89   5e-18
BC016512-1|AAH16512.1|  529|Homo sapiens ATP synthase, H+ transp...    89   5e-18

>X03559-1|CAA27246.1|  539|Homo sapiens protein ( Human mRNA for
           F1-ATPase beta subunit (F-1 beta). ).
          Length = 539

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 82  DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 130



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQ VLDSG+PI+IP
Sbjct: 131 RGQKVLDSGAPIKIP 145


>M27132-1|AAA51809.1|  529|Homo sapiens ATP synthase beta subunit
           precursor protein.
          Length = 529

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 72  DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQ VLDSG+PI+IP
Sbjct: 121 RGQKVLDSGAPIKIP 135


>M19483-1|AAA51808.1|  529|Homo sapiens ATPSB protein.
          Length = 529

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 72  DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120


>D00022-1|BAA00016.1|  539|Homo sapiens F1 beta subunit protein.
          Length = 539

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 82  DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 130



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQ VLDSG+PI+IP
Sbjct: 131 RGQKVLDSGAPIKIP 145


>DQ403107-1|ABD77240.1|  445|Homo sapiens mitochondrial ATP
           synthase, H+ transporting F1 complex beta subunit
           protein.
          Length = 445

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 8   DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 56



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQ VLDSG+PI+IP
Sbjct: 57  RGQKVLDSGAPIKIP 71


>BC016512-1|AAH16512.1|  529|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F1 complex, beta polypeptide
           protein.
          Length = 529

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/49 (85%), Positives = 45/49 (91%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++ LPPILNALEVQ R  RLVLEVAQHLGE+TVRTIAMDGTEGLV
Sbjct: 72  DVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQ VLDSG+PI+IP
Sbjct: 121 RGQKVLDSGAPIKIP 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,612,415
Number of Sequences: 237096
Number of extensions: 1006424
Number of successful extensions: 1723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)