Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    86   6e-18
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 39/49 (79%), Positives = 44/49 (89%)
 Frame = +1

Query: 166 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
           DVQF++NLPPILN LEV  RSPRL+LEV+QHLG+N VR IAMDGTEGLV
Sbjct: 81  DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +2

Query: 314 RGQPVLDSGSPIRIP 358
           RGQPV D+G PI+IP
Sbjct: 130 RGQPVADTGDPIKIP 144


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 99  PLVNGIDCNDFSTF 58
           PLVNG+ C D STF
Sbjct: 594 PLVNGLACKDLSTF 607


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 198  NRRQVIFELHIYHSTDNGNNLTLAFSCRFS 109
            N + V ++LH  H T   NN    F+ RFS
Sbjct: 1196 NHQHVQYQLHQQHMTVRNNNHEAGFTNRFS 1225


>Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical
           protein C27C7.7 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 211 EVQNRSPRLVLEVAQHLGEN 270
           ++Q   PRL+ ++A+HLG N
Sbjct: 73  QLQAEQPRLLTKLAEHLGSN 92


>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 29  LNQLLRNPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRL---LPLSV-LW*MCNSKIT 187
           L Q L+N  Q+ +     +P    T +L+     KVR    +P ++  W +C+ K+T
Sbjct: 306 LYQFLKNKSQSQKPLKADVPCLNDTEMLSYMNNPKVRKAIHIPFNLGKWDICSDKVT 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,987,487
Number of Sequences: 27780
Number of extensions: 150551
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)