Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1249
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   5.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 223 RSPRLVLEVAQHLGENTVRTIAMDGTE 303
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 246 LKYEAGRSILHLKGI*NRRQVIFELHIYH 160
           L+    + ++HLK I +   ++   +IYH
Sbjct: 100 LRDSVTKYLIHLKEIEDTEPILLIAYIYH 128


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 60  MWKNRCSQCR*QE 98
           +W   CSQC  QE
Sbjct: 356 LWSGFCSQCIWQE 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,759
Number of Sequences: 438
Number of extensions: 1673
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)