Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1249
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 74 3e-14
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 74 3e-14
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 74 3e-14
At3g57710.1 68416.m06429 protein kinase family protein contains ... 31 0.17
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.23
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 0.53
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 2.8
At5g39880.1 68418.m04837 expressed protein 27 3.8
At1g51910.1 68414.m05851 protein kinase family protein contains ... 27 5.0
At2g15560.1 68415.m01782 expressed protein contains Pfam profile... 26 6.6
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 26 8.7
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 26 8.7
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 73.7 bits (173), Expect = 3e-14
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Frame = +1
Query: 166 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLV
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLV 145
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 73.7 bits (173), Expect = 3e-14
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Frame = +1
Query: 166 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLV
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLV 148
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 73.7 bits (173), Expect = 3e-14
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Frame = +1
Query: 166 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLV
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLV 145
>At3g57710.1 68416.m06429 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 351
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 229 PRLVLEVAQHLGENTVRTIAMDGTEGLVPWATRTRL 336
P LV E A+H N + ++G E L+PW+ R ++
Sbjct: 133 PVLVFEFAEHGAMNQRGGVIVNGEESLLPWSVRLKI 168
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 181 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 312
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 0.53
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 271 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 155
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 271 CSHPNVGLPQVRGGEIDFAPQGHLESEA 188
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 74 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 193
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
>At1g51910.1 68414.m05851 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 876
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 187 LPPILNALEVQNRSPRLVLEVAQ 255
LPP++NALEV L+LE Q
Sbjct: 343 LPPLINALEVYTLVENLLLETYQ 365
>At2g15560.1 68415.m01782 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 489
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 232 GEIDFAPQGHLESEAGYLRIAHLP 161
G++DFAP H+ + GY I +P
Sbjct: 152 GDVDFAPALHILGQRGYTVILVIP 175
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 328 YGLPTGLSLQYRPWQWSELCSHPNVGLPQV---RGGEIDFAP 212
Y +P G QY P S+L +PN +PQV G I F P
Sbjct: 907 YPVPPGPG-QYAPSGPSQLGQYPNPKMPQVVAPAAGPIGFTP 947
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = -3
Query: 328 YGLPTGLSLQYRPWQWSELCSHPNVGLPQV---RGGEIDFAP 212
Y +P G QY P S+L +PN +PQV G I F P
Sbjct: 909 YPVPPGPG-QYAPSGPSQLGQYPNPKMPQVVAPAAGPIGFTP 949
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,681,227
Number of Sequences: 28952
Number of extensions: 143502
Number of successful extensions: 350
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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