Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1232
         (444 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    85   3e-19
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.18 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   4.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 85.0 bits (201), Expect = 3e-19
 Identities = 41/99 (41%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
 Frame = +1

Query: 82  PRQIIRWAKDIAQGMVYLHNRKIIHRDLKSPNVLVADNLVAKVSDFGTSREWDNESAVMS 261
           P+ ++  A+ +A GM +L   +++HRDL + NVLV +N   KVSDFG SR+   ++    
Sbjct: 591 PKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCK 650

Query: 262 FTG---TVAWMAPEVIRHEPCSERVDVWSFGVVLWELLT 369
             G    V WMA E + H+  +   DVWSFGV+LWE++T
Sbjct: 651 NGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVT 689


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 0.18
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 426 GAHSPENSMSLQGLVRDLLGQQLP*HNTERPDIHTLRARLMADHFGRH 283
           GA+SP+ +M   G + D  GQQ+       P  H   A   A+++G H
Sbjct: 413 GAYSPDGTM---GYMMD--GQQMMHRPPGDPAFHNQYAHYPAEYYGHH 455



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 333 LVFRCCVMGAVDPGDPVQDLGDSCYS 410
           L+F  C +    P +P    GD C S
Sbjct: 91  LIFEKCELATCTPREPGVAGGDVCSS 116


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 48  LRLPSQRCIFYTQTD 92
           LR P    IFY QTD
Sbjct: 592 LRYPDLNKIFYVQTD 606


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,024
Number of Sequences: 336
Number of extensions: 2897
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9985735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)