Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1218
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   1.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.1  
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   3.7  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   6.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   6.5  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -2

Query: 330 EFTSVKVSREACSQTSRARANTLRVSYGSSREGRRVDDKRCRAGTHFLWAAKNQQIVRN 154
           ++ + +V +E         + T  + + S+    R+ + +C+  THFL +++N   VRN
Sbjct: 9   DYPTTQVRKERVHTYRTLTSATPSLEFFSNENTNRLSEVQCKL-THFLSSSENSSSVRN 66


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 186  KENECQLCNVCHRRVVLLYWTRTRHAAC 269
            K+N  +LC++C  R  L+ W R++  AC
Sbjct: 2549 KDNTSELCSLCDSRFSLMEW-RSQCRAC 2575


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 500 DEEGTSLFAVAVHEFG 547
           DE GT+L  VAVH FG
Sbjct: 64  DEHGTALGCVAVHPFG 79


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 314 FTEVNSEEADILVSFAKRYHDDAYLFDGRGTILAHAFFPGVDRGGDAHFDDDELW 478
           FT    EE  +   F  R+ +D Y+   +G     A    VDR  +   D+DE+W
Sbjct: 679 FTSKKQEEIPVDELFFYRFFNDKYI---KGK---QARKTKVDRDEEGEIDEDEVW 727


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 196 SFSLGRKKSANST*QKRFDALRVQLNN 116
           SFS+ R+  A S+     D   VQLNN
Sbjct: 108 SFSINREACATSSITSLMDTFNVQLNN 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,367
Number of Sequences: 5004
Number of extensions: 52266
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)