Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1218
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0697 - 30999644-31000762 85 3e-17
10_08_0900 - 21436508-21437521 79 4e-15
06_01_0940 + 7235801-7236916 75 3e-14
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452... 65 5e-11
05_01_0469 - 3725117-3725170,3725282-3725356,3726938-3727015,372... 31 0.72
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 30 1.3
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058 29 3.8
03_03_0029 - 13900912-13901457,13901574-13901709,13901961-139021... 29 3.8
01_06_1809 - 40029628-40030539 29 3.8
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 28 6.7
07_01_0468 + 3537669-3537890,3539003-3539130,3539398-3539621,353... 28 6.7
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 28 6.7
03_05_1041 - 29884975-29885107,29885485-29885552,29885652-298858... 28 6.7
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 27 8.9
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 27 8.9
>02_05_0697 - 30999644-31000762
Length = 372
Score = 85.4 bits (202), Expect = 3e-17
Identities = 54/124 (43%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYLFDGRGTILAH 418
+D +V ARA W A+RL FTEV+S ADI + F H D FDG LAH
Sbjct: 179 IDRATLSAVFARAFSRWAAATRLQFTEVSSASNADITIGFYSGDHGDGEAFDGPLGTLAH 238
Query: 419 AFFPGVDRGGDAHFDDDELWLL--EPKDDDEEGTS--LFAVAVHEFGHSLGLSHSSVKGA 586
AF P G H D E W+ + GT+ L +VAVHE GH LGL HSSV +
Sbjct: 239 AFSP---TDGRFHLDAAEAWVASGDVSTSSSFGTAVDLESVAVHEIGHLLGLGHSSVPDS 295
Query: 587 LMYP 598
+MYP
Sbjct: 296 IMYP 299
>10_08_0900 - 21436508-21437521
Length = 337
Score = 78.6 bits (185), Expect = 4e-15
Identities = 50/130 (38%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +2
Query: 215 LSSTRRPSLLDPYETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYLF 391
+S T L P R+V RA W + + F E + E ADI V F H D F
Sbjct: 145 VSPTATVGYLPPAAVRAVFQRAFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPF 204
Query: 392 DGRGTILAHAFFPGVDRGGDAHFDDDELWLLE-PKDDDEEGTSLFAVAVHEFGHSLGLSH 568
DG IL HAF P + G H D E W ++ D L +VA HE GH LGL H
Sbjct: 205 DGPLGILGHAFSP---KNGRLHLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGH 261
Query: 569 SSVKGALMYP 598
S+ A+MYP
Sbjct: 262 SASPRAVMYP 271
>06_01_0940 + 7235801-7236916
Length = 371
Score = 75.4 bits (177), Expect = 3e-14
Identities = 49/132 (37%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Frame = +2
Query: 215 LSSTRRPSLLDPYETRSVLARALDVWEQASRLTFTEVNSE-EADILVSFAKRYHDDAYLF 391
+++T + S+ D V A A W A+ L FTE S +ADI + F H D F
Sbjct: 171 ITATSQTSI-DRATLSKVFASAFARWSAATTLNFTEAASAADADITIGFYGGDHGDGEAF 229
Query: 392 DGRGTILAHAFFPGVDRGGDAHFDDDELWLLE---PKDDDEEGTSLFAVAVHEFGHSLGL 562
DG LAHAF P G H D E W+ + L +VAVHE GH LGL
Sbjct: 230 DGPLGTLAHAFSP---TNGRLHLDASEAWVAGGDVTRASSNAAVDLESVAVHEIGHILGL 286
Query: 563 SHSSVKGALMYP 598
HSS ++M+P
Sbjct: 287 GHSSAADSIMFP 298
>10_08_0901 -
21443224-21444085,21444804-21444998,21445189-21445259,
21446293-21447094,21447687-21447723,21448270-21449023
Length = 906
Score = 64.9 bits (151), Expect = 5e-11
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Frame = +2
Query: 263 SVLARALDVWEQASRLTFTEVNSE------EADILVSF-AKRYHDDAYLFDGRGTILAHA 421
+V A W + ++F E+ +E EADI V F H D + FDG + AHA
Sbjct: 86 AVFRSAFARWAEVIPVSFAEITTEDDAAAAEADIRVGFYGAGEHGDGHPFDGPLNVYAHA 145
Query: 422 FFPGVDRGGDAHFDDDELWLLE-PKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYP 598
P G FD E W ++ D L VA HE GH+LGL HS+ + ++MYP
Sbjct: 146 TGP---EDGRIDFDAAERWAVDLAADASPAAVDLETVATHEIGHALGLDHSTSESSVMYP 202
Query: 599 W 601
+
Sbjct: 203 Y 203
Score = 50.8 bits (116), Expect = 8e-07
Identities = 46/129 (35%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Frame = +2
Query: 260 RSVLARALDVWEQASRLTFTEV-NSEEADILVSFAKRYHD---DAY--LFDGRGT-ILAH 418
R AL W + + L F E EEADI V F D DA + G G LAH
Sbjct: 705 REAFRSALARWAEVTPLRFAEAARYEEADIRVGFYLHTADGKCDACGCVCKGGGEEALAH 764
Query: 419 AFFPGVDRGGDAHFDDDELWLLEPK-----DDDEEGTSLFAVAVHEFGHSLGLSHSSVKG 583
A P + G H W + D L +VAVHE GH+LGL HSS +
Sbjct: 765 AHPP---QDGRIHLHAARKWAVTNVAGAGGDAPPLAVDLESVAVHEIGHALGLGHSSSES 821
Query: 584 ALMYPWYQG 610
++MY Y+G
Sbjct: 822 SMMYRHYRG 830
Score = 48.0 bits (109), Expect = 6e-06
Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Frame = +2
Query: 215 LSSTRRPSLLDPYETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHD----- 376
+S T L P R+ L A W + F E + ADI V F Y D
Sbjct: 323 VSPTATADHLPPSAVRAALRSAFARWADVIPMRFLEAERYDAADIKVGFYL-YTDGRCDG 381
Query: 377 ----DAYLFDGRGT----ILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEE-GTSLFAV 529
D+ D G +LAH+ P ++ G H W + D L +V
Sbjct: 382 CACIDSDDDDDDGDDCEGVLAHSSMP--EKSGQIHLHAAHRWTVNLAADTAPLAVDLESV 439
Query: 530 AVHEFGHSLGLSHSSVKGALMYPW 601
A HE GH LGL HSS + ++MYP+
Sbjct: 440 AAHEIGHVLGLDHSSSRSSMMYPF 463
>05_01_0469 -
3725117-3725170,3725282-3725356,3726938-3727015,
3727091-3727183,3727582-3727696,3728028-3728158,
3728243-3728512,3728983-3729120
Length = 317
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 339 PISLSRSPNVTMTMHIYSMDEVRF*LTLSFLAWTAVVTRTLMMTNS 476
PI+LS+ + HI ++ EV F +T + AW A++ L T S
Sbjct: 12 PINLSQLLSKLSQWHILTIFEVLFSITTGYFAWLAMIAHLLDGTTS 57
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -3
Query: 470 RHHQSARHHRGPRQERKRELESYLVHRIDMHRHGNVWRTRQGYRP 336
R HQ RHHR R R S+ H H HG + R+ + P
Sbjct: 528 RRHQKGRHHRHHHDHRHRHGHSHGDHH--HHYHGGHHQRRRHHHP 570
>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
Length = 484
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 350 VSFAKRYHDDAYLFDGRGTILAHAFFP-GVDRGGDAHFDDDELWLLEPKDDDE 505
+S K Y DD +L D + P G++R G ++ D LW +DD+
Sbjct: 207 LSIIKCYIDDGFLVDAPNLVSLCFIRPLGIERKGGSNSSSDRLWWPVWLNDDD 259
>03_03_0029 -
13900912-13901457,13901574-13901709,13901961-13902179,
13902429-13902801,13903215-13903458
Length = 505
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 323 VNSEEADILVSFAKRYHDDAYLFDGRGTILAHAFFPGVDRGGDAHFDD-DELWL 481
+N +LV +R H D + D T L H F + A FDD D+L+L
Sbjct: 11 INVPYTVMLVDVLERLHIDNHFRDEIATALQHVFHHDEQQKAAAGFDDGDQLYL 64
>01_06_1809 - 40029628-40030539
Length = 303
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 434 VDRGGDAHFDDDELWLLEPKDDDEE 508
VD GG A+ DDDE + DDDEE
Sbjct: 154 VDGGGHANEDDDEDHTDDDDDDDEE 178
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 398 RGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGT---SLFAVAVHEFGHSLGLSH 568
R I A AFF G GG + L P+D D GT S A AV LG +
Sbjct: 181 RKLIGARAFFRGYGAGGGGNGSHVSLEFSSPRDHDGHGTHTASTAAGAVVADAGLLGYAE 240
Query: 569 SSVKG 583
+ +G
Sbjct: 241 GTARG 245
>07_01_0468 +
3537669-3537890,3539003-3539130,3539398-3539621,
3539660-3540062,3540398-3540473
Length = 350
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 428 PGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVK 580
PG G + D+DEL +D E V VHE G +G+ H+ K
Sbjct: 152 PGARNGWERAIDEDELLDALDGEDLERAHEQALVLVHEAG-GIGVGHADGK 201
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 181 GPKKMSASSATFVIDASSFSTGPVRDTQRVGTRPRRLGTSLPTYFHRSKFGRGRYPCL-V 357
G K+++++ V D+ S +TG GT R L + H+S + P +
Sbjct: 668 GGKEVASNDVHRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAVAT 727
Query: 358 RQTLP 372
+QT P
Sbjct: 728 KQTSP 732
>03_05_1041 -
29884975-29885107,29885485-29885552,29885652-29885816,
29886262-29886372,29886999-29887072,29887387-29887480,
29887750-29887849,29888075-29888151,29888856-29888935,
29889025-29889157
Length = 344
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 572 YCG*VLTNVQ-TREQQQQKVMCLLHRHLWALTTRVRHHQSARHH 444
Y G ++++VQ T Q QK +CL +W + TR++ Q+ HH
Sbjct: 111 YKGKMISSVQFTILSQLQKQVCLFTNPIWLVKTRLQ-LQTPSHH 153
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 251 TGPVEKDDASMTNVAELALIFFGPQKI 171
T PVE DD+S+ A+L ++ G +KI
Sbjct: 480 TAPVESDDSSIVTGAQLEVVSHGFKKI 506
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 392 DGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVH 538
D ++L H PG GGD DE+ P+ DD++ SL ++ H
Sbjct: 248 DTTHSLLKHNTRPGTGSGGD-----DEIAAELPRRDDDDELSLISLRAH 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,733,701
Number of Sequences: 37544
Number of extensions: 357205
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -