Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1218
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55442| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 6e-25
SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 109 2e-24
SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 4e-24
SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 5e-23
SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 9e-23
SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 100 1e-21
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 5e-20
SB_58112| Best HMM Match : Peptidase_M10 (HMM E-Value=4.3e-40) 93 2e-19
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 6e-18
SB_17010| Best HMM Match : Peptidase_M10 (HMM E-Value=6.2e-27) 84 7e-17
SB_49022| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-28) 83 2e-16
SB_40546| Best HMM Match : Peptidase_M10 (HMM E-Value=3.5e-27) 82 4e-16
SB_28025| Best HMM Match : Peptidase_M10 (HMM E-Value=5.1e-36) 77 1e-14
SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37) 77 1e-14
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 77 1e-14
SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30) 76 3e-14
SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 74 1e-13
SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_50696| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 29 3.9
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 29 3.9
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_13907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 28 5.2
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 28 6.9
SB_48903| Best HMM Match : E1-E2_ATPase (HMM E-Value=3) 28 6.9
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_6485| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_55442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 111 bits (266), Expect = 6e-25
Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQASRLTFTEVNSE-EADILVSFAKRYHDD-------AYLFDG 397
LD R + ARAL W S L+F+ N+ ADI +SF R H AY FDG
Sbjct: 47 LDKDSQRRIFARALQYWSDVSGLSFSPTNNGGSADIKISFGARSHGGPHDGNRCAYAFDG 106
Query: 398 RGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSV 577
G +LAHAFFP G AHFD+DE + D GT+L VA HEFGH+LGL HS V
Sbjct: 107 PGKVLAHAFFPS---NGRAHFDEDETYT----DGTPSGTNLMWVATHEFGHALGLEHSDV 159
Query: 578 KGALMYPWYQG 610
+ A+MYP+Y G
Sbjct: 160 RNAVMYPYYTG 170
>SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 515
Score = 109 bits (262), Expect = 2e-24
Identities = 61/124 (49%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Frame = +2
Query: 266 VLARALDVWEQASRLTFTE-VNSEEADILVSFAKRYHDD--------AYLFDGRGTILAH 418
V A+ALD W + S LTF+ ++ E AD+ +SF + H +Y FDG G +LAH
Sbjct: 222 VFAKALDYWARVSGLTFSRTMDGENADLKISFGPKSHGGTHDPEGTCSYPFDGPGGVLAH 281
Query: 419 AFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYP 598
AFFP R G AHFD+DE + D EGT+L VA HEFGHSLGL HS V+ A+MYP
Sbjct: 282 AFFP---RNGRAHFDEDE----DFTDGTYEGTNLLWVATHEFGHSLGLHHSDVRDAVMYP 334
Query: 599 WYQG 610
+Y G
Sbjct: 335 YYTG 338
>SB_16343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 449
Score = 109 bits (261), Expect = 2e-24
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 6/113 (5%)
Frame = +2
Query: 290 WEQASRLTFTEVN----SEEADILVSFAKRYHDDAYLFDGRGTILAHAFFPGVDRG--GD 451
W S+L E + ++ DIL+ F + YH D Y FDG G LAHAF+P + G GD
Sbjct: 113 WTGVSKLKIREASPDLPDDKVDILIDFVRGYHGDGYPFDGPGGTLAHAFYPHNNEGISGD 172
Query: 452 AHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWYQG 610
AHFDDDE + + G +L VA+HEFGHSLG+ HS V G++M+PWYQG
Sbjct: 173 AHFDDDE----DFTTGKDSGINLDWVALHEFGHSLGIDHSEVHGSIMFPWYQG 221
>SB_33023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 108 bits (259), Expect = 4e-24
Identities = 59/123 (47%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Frame = +2
Query: 254 ETRSVLARALDVWEQASRLTFTEVNSE--EADILVSFAKRYHDDAYLFDGRGTILAHAFF 427
E + + AL +W + LTF EV E +I + F H D Y FDG G LAHAF+
Sbjct: 142 EVDNAIRNALAMWAAVTPLTFIEVYDPRIEVEIRIRFVTGDHGDGYPFDGPGGTLAHAFY 201
Query: 428 PGVDRG--GDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPW 601
P + G GDAHFDD+E + L + G LF VAVHEFGHSLGL HSS A+MYP+
Sbjct: 202 PHDNTGLSGDAHFDDEEYFTLRT----DHGIDLFWVAVHEFGHSLGLDHSSNVDAIMYPF 257
Query: 602 YQG 610
Y+G
Sbjct: 258 YRG 260
>SB_18787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 104 bits (250), Expect = 5e-23
Identities = 57/124 (45%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +2
Query: 236 SLLDPYETRSVLARALDVWEQASRLTFT-EVNSEEADILVSFAKRYHDDAYLFDGRGTIL 412
S + +SVL A W + L F E + ADI + F YH D+ FDG G L
Sbjct: 240 SKMSEASVKSVLTNAFRTWAEVIPLVFRWEPIATRADITIRFVTGYHGDSKSFDGPGNEL 299
Query: 413 AHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALM 592
AHAF+P GGD HFDDDE W P D SL VA HE GHSLGLSHS+ G++M
Sbjct: 300 AHAFYP--QYGGDIHFDDDEPWT--PSTSDATHKSLLKVATHEIGHSLGLSHSTQAGSIM 355
Query: 593 YPWY 604
P Y
Sbjct: 356 NPVY 359
>SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 103 bits (248), Expect = 9e-23
Identities = 55/115 (47%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Frame = +2
Query: 266 VLARALDVWEQASRLTFTE-VNSEEADILVSFAKRYHDD-AYLFDGRGTILAHAFFPGVD 439
V A+ALD W + S L+F+ ++ + AD+ +SF + H A FDG G +LAHAFFP
Sbjct: 130 VFAKALDYWARVSGLSFSRTMDFQNADLRISFGYKSHSGCASPFDGPGGVLAHAFFP--- 186
Query: 440 RGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWY 604
G AHFD+DE + D +GT+L VA HEFGHSLGL HS+V+ A+M+P+Y
Sbjct: 187 HDGRAHFDEDENFT----DGTSQGTNLLWVATHEFGHSLGLDHSNVQSAIMFPYY 237
>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 556
Score = 100 bits (239), Expect = 1e-21
Identities = 55/117 (47%), Positives = 66/117 (56%)
Frame = +2
Query: 260 RSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYLFDGRGTILAHAFFPGVD 439
R + ARA +W +L E + +AD VSF H D FDG G LAHAFFP
Sbjct: 110 RRIFARAAKLWSDKMQLNIKETSDAKADFTVSFNSYDHGDGDPFDGPGGTLAHAFFP--Q 167
Query: 440 RGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWYQG 610
GGD HFDD E + E KD G +L VA HE GH+LGLSHS V ++M P+Y G
Sbjct: 168 YGGDLHFDDSETY-TEGKD---AGVNLLFVAAHELGHTLGLSHSDVWQSVMAPYYPG 220
>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 96.7 bits (230), Expect = 1e-20
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 7/120 (5%)
Frame = +2
Query: 266 VLARALDVWEQASRLTFTEVNSE-EADILVSFAKRYHDD------AYLFDGRGTILAHAF 424
V +AL W S+L+F+ AD+ +SF H AY FDGRG +LAHAF
Sbjct: 445 VFEKALQFWADVSKLSFSRTRYVWNADLKISFGSVTHRGPGESHCAYPFDGRGKVLAHAF 504
Query: 425 FPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWY 604
+P G HFDDDE + D +G +L VA HEFGH+LGL HS+V+GA+M+P+Y
Sbjct: 505 YPP---NGRCHFDDDETYT----DGISDGINLLWVATHEFGHALGLEHSNVRGAVMFPYY 557
>SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 94.7 bits (225), Expect = 5e-20
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Frame = +2
Query: 266 VLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDD------AYLFDGRGTILAHAF 424
V +AL W S L+F+ V+ +AD+ +SF R H+ FDG G +LAHA+
Sbjct: 303 VFEKALKFWSDGSALSFSRVSDVSKADLKISFGSRSHNGPGESRCGSPFDGPGRVLAHAY 362
Query: 425 FPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWY 604
FP G HFD+DE + D G +L VA HEFGH+LGL HS V+ A+MYP+Y
Sbjct: 363 FPS---NGRCHFDEDERYT----DGASSGINLLWVATHEFGHALGLHHSDVRNAVMYPYY 415
Query: 605 QG 610
G
Sbjct: 416 TG 417
>SB_58112| Best HMM Match : Peptidase_M10 (HMM E-Value=4.3e-40)
Length = 123
Score = 92.7 bits (220), Expect = 2e-19
Identities = 52/110 (47%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Frame = +2
Query: 287 VWEQASRLTFTEVN-SEEADILVSFAKRYHDDA-YLFDGRGTILAHAFFPGVDRGGDAHF 460
+W S LTFT V+ + ADI ++F H + Y FDG+G++LAHAFFP G HF
Sbjct: 1 MWSDNSNLTFTLVSDASNADIKIAFVTGTHSNCIYPFDGQGSVLAHAFFP---TDGSLHF 57
Query: 461 DDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWYQG 610
DDDE + D GT+L AVAVHE GH LG+ HSS ++M P Y G
Sbjct: 58 DDDE----DFTDGVATGTNLLAVAVHEIGHILGVGHSSETNSVMNPNYSG 103
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 87.8 bits (208), Expect = 6e-18
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Frame = +2
Query: 260 RSVLARALDVWEQASRLTFT-EVNSEEADILVSFAKRYHDDAY-LFDGRGTILAHAFFPG 433
++V+A+A +W S FT + +A I + F H + FDG G ++AHA++P
Sbjct: 851 KAVIAKAFKMWSDVSPFIFTLTTDKTKAHIKILFGTNTHGNCLKAFDGPGKVIAHAYYPS 910
Query: 434 VDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWYQ 607
G HFDDDE + D GT+L A+AVHE GH LG++HS+ K ++MYP Y+
Sbjct: 911 ---DGRLHFDDDETFT----DGVNTGTNLLAIAVHEIGHILGIAHSTDKNSVMYPKYE 961
>SB_17010| Best HMM Match : Peptidase_M10 (HMM E-Value=6.2e-27)
Length = 107
Score = 84.2 bits (199), Expect = 7e-17
Identities = 44/77 (57%), Positives = 51/77 (66%)
Frame = +2
Query: 380 AYLFDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLG 559
AY FDG G ILAHAFFP G AHFD+DE + D +GT+L VA HEFGHSL
Sbjct: 18 AYPFDGPGGILAHAFFPP---NGRAHFDEDEKFT----DGTSDGTNLLWVATHEFGHSLC 70
Query: 560 LSHSSVKGALMYPWYQG 610
L HS V+ A+MYP+Y G
Sbjct: 71 LHHSDVRDAVMYPYYTG 87
>SB_49022| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-28)
Length = 122
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/74 (55%), Positives = 49/74 (66%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G +LAHA+FP G AHFD+DE + G +L VA HEFGHSLGL H
Sbjct: 13 FDGPGKVLAHAYFPS---DGRAHFDEDETFT----HGTSSGINLMWVAAHEFGHSLGLGH 65
Query: 569 SSVKGALMYPWYQG 610
S+V+GALMYP+Y G
Sbjct: 66 SNVQGALMYPYYTG 79
>SB_40546| Best HMM Match : Peptidase_M10 (HMM E-Value=3.5e-27)
Length = 100
Score = 81.8 bits (193), Expect = 4e-16
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G +LAHAFFP G AHFD+DE + D +GT+L VA HEFGHSLGL H
Sbjct: 14 FDGPGGVLAHAFFPN---DGRAHFDEDENFT----DGTSQGTNLLWVATHEFGHSLGLDH 66
Query: 569 SSVKGALMYPWY 604
S+V+ A+M+P+Y
Sbjct: 67 SNVQSAIMFPYY 78
>SB_28025| Best HMM Match : Peptidase_M10 (HMM E-Value=5.1e-36)
Length = 219
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G LAHA G D AHFD+DE + D G +L VAVHEFGH+LGL H
Sbjct: 80 FDGEGGTLAHASLAGAD----AHFDEDETFTHNSYD----GINLLWVAVHEFGHNLGLDH 131
Query: 569 SSVKGALMYPWYQG 610
S V+GA+MYP+Y G
Sbjct: 132 SDVQGAIMYPYYTG 145
>SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37)
Length = 359
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G LAHA G D AHFD+DE + D G +L VAVHEFGH+LGL H
Sbjct: 80 FDGEGGTLAHASLAGAD----AHFDEDETFTHNSYD----GINLLWVAVHEFGHNLGLDH 131
Query: 569 SSVKGALMYPWYQG 610
S V+GA+MYP+Y G
Sbjct: 132 SDVQGAIMYPYYTG 145
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 76.6 bits (180), Expect = 1e-14
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 365 RYHDDA-YLFDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHE 541
R H + Y FDG+G++LAHAFFP G HFDDDE + D GT+L AVAVHE
Sbjct: 112 RTHSNCIYPFDGQGSVLAHAFFP---TDGSLHFDDDE----DFTDGVATGTNLLAVAVHE 164
Query: 542 FGHSLGLSHSSVKGALMYPWYQG 610
GH LG+ HSS ++M P Y G
Sbjct: 165 IGHILGVGHSSETNSVMNPNYSG 187
>SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30)
Length = 284
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G LAHAF+P G HFD+DE + D EG +L VA HEFGHSLGL H
Sbjct: 165 FDGPGNTLAHAFYPS---DGVVHFDEDE----DFTDGTSEGMNLLWVATHEFGHSLGLRH 217
Query: 569 SSVKGALMYPWYQG 610
+ V+ A+M+P+Y G
Sbjct: 218 TDVQDAVMFPYYTG 231
>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 684
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/74 (52%), Positives = 46/74 (62%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G LAHA G AHFD+DE + D G +L VAVHEFGH+LGL H
Sbjct: 114 FDGEGGTLAHAALAGAV----AHFDEDETFTHNSYD----GVNLLWVAVHEFGHNLGLGH 165
Query: 569 SSVKGALMYPWYQG 610
S V+GA+MYP+Y G
Sbjct: 166 SDVQGAIMYPYYTG 179
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/74 (52%), Positives = 46/74 (62%)
Frame = +2
Query: 389 FDGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
FDG G LAHA G AHFD+DE + D G +L VAVHEFGH+LGL H
Sbjct: 338 FDGEGGTLAHAALAGAM----AHFDEDETFTHNSYD----GVNLLWVAVHEFGHNLGLEH 389
Query: 569 SSVKGALMYPWYQG 610
S V+GA+MYP+Y G
Sbjct: 390 SDVQGAIMYPYYTG 403
>SB_36408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 527 VAVHEFGHSLGLSHSSVKGALMYPWY 604
+A+HE GHSLGL+H+ ++MY Y
Sbjct: 126 IAMHEIGHSLGLAHTGDPFSVMYTTY 151
>SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQASRLTFTEVNSEEAD 343
L P ET SVLAR L +W ++ +++VN++ D
Sbjct: 111 LSPEET-SVLARGLTIWPTRRKIDWSQVNADICD 143
>SB_50696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 446 GDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEF 544
GD DDD++WLL +DDD+ G + H++
Sbjct: 7 GDGDDDDDKVWLL-LEDDDDNGARCCWLGNHDY 38
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 485 LTTRVRHHQSAR--HHRGPRQERKRELESYLVHRIDMHRHGNVWRTRQGYR 339
+ + RHHQ + HHR +Q+R ++ ++ H+ +HG R +Q ++
Sbjct: 859 INEKQRHHQQGKQQHHRLHQQQRHKKNDNPHQHQQQKQQHGYHHRHQQKHQ 909
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 437 DRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFG 547
D DAH DD L + +DD++ SLF++ + G
Sbjct: 930 DECDDAHLTDDMARLNDDDEDDDDDESLFSMYLRNTG 966
>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 365 RYHDDAYLF-DGRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDE 505
+YH F DG G + A P VD D DDD+ +++ +DD+
Sbjct: 121 KYHSSLGRFLDGPGVLNRKAISPHVDAVVDDDDDDDDNPVIDDDNDDD 168
>SB_13907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 476 RVRHHQSARHHRGPRQERKRELESYLVHRIDMHRH 372
R R H+ R HR ++ER E + DMH+H
Sbjct: 210 RKRDHKRRRKHRKEKKERIPESSDSCLSDDDMHKH 244
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -3
Query: 506 LHRHLWALTTRVRHHQSARHHRGPRQ---ERKRELESYLVHRIDMHRHGNVWRTRQGYRP 336
LH H + L+ + HH S+RHH R R L HR + H R +RP
Sbjct: 386 LHYHRFRLS--IHHHPSSRHHHCHRPLLFNHLRPSRCLLYHRPRLSNHHRPSRLLHCHRP 443
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 506 EGTSLFAVAVHEFGHSLGLSHSS 574
+G + +HEFGH++G HS+
Sbjct: 186 DGCQYVGLVLHEFGHAIGYFHST 208
>SB_48903| Best HMM Match : E1-E2_ATPase (HMM E-Value=3)
Length = 351
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = -3
Query: 296 VPKRRGRVPTRCVSRTGPVEKDDASMTNVAELALIFFGPQKISK*YVTKAI*CFTSAIK* 117
+P+ GR+ +TG + +++ + L + FG + + +VT CF +K
Sbjct: 257 IPEELGRIGYLLTDKTGTLTQNEMVFKRL-HLGTVSFGTDSMEEVFVTHTCYCFHLILKG 315
Query: 116 RNA 108
+N+
Sbjct: 316 KNS 318
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = -3
Query: 545 QTREQQQQKVMCLLH---RHLWALTTRVRH----HQSARHHRGPRQERKRELESYLVHRI 387
+TR+ ++ + H RH + R RH H+++RH R + R+ E + R
Sbjct: 30 ETRQHERSRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERSRHKTSRH 89
Query: 386 DMHRH 372
+ RH
Sbjct: 90 ETSRH 94
>SB_6485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 536 EQQQQKVMCLLHRHLWALTTRVRHHQSARHHRGPRQERKR 417
+Q QK M L + L T HH +HR + ERK+
Sbjct: 134 KQDFQKYMKQLFKELGMNNTAPEHHGPITYHRARQYERKK 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,518
Number of Sequences: 59808
Number of extensions: 420886
Number of successful extensions: 1479
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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