Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1218
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical ... 98 4e-21
AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix metall... 98 4e-21
U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical pr... 88 4e-18
AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like prot... 88 4e-18
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 85 3e-17
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 85 3e-17
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 85 3e-17
Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 51 7e-07
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 51 7e-07
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 29 2.0
Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL031635-3|CAB54383.1| 149|Caenorhabditis elegans Hypothetical ... 28 4.6
AF040647-1|AAB94994.1| 45|Caenorhabditis elegans Hypothetical ... 28 4.6
U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate fi... 28 6.0
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 28 6.0
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 28 6.0
U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 27 8.0
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical
protein C31B8.8 protein.
Length = 579
Score = 98.3 bits (234), Expect = 4e-21
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Frame = +2
Query: 254 ETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYLFDGRGTILAHAFFP 430
+ R ++ A +W + + L F+EV + +DI + F R H+D + FDG G +LAHA P
Sbjct: 160 DVRRAISEAYGLWSKVTPLEFSEVPAGSTSDIKIRFGVRNHNDPWPFDGEGGVLAHATMP 219
Query: 431 GVDRGGDAHFDDDELWLLEP--KDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWY 604
G HFDDDE W + K + E T L AVA+HE GH+LGL HS + A+M P+Y
Sbjct: 220 ---ESGMFHFDDDENWTYKDARKIHNNEATDLLAVAIHEGGHTLGLEHSRDENAIMAPFY 276
Query: 605 Q 607
Q
Sbjct: 277 Q 277
>AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 579
Score = 98.3 bits (234), Expect = 4e-21
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Frame = +2
Query: 254 ETRSVLARALDVWEQASRLTFTEVNS-EEADILVSFAKRYHDDAYLFDGRGTILAHAFFP 430
+ R ++ A +W + + L F+EV + +DI + F R H+D + FDG G +LAHA P
Sbjct: 160 DVRRAISEAYGLWSKVTPLEFSEVPAGSTSDIKIRFGVRNHNDPWPFDGEGGVLAHATMP 219
Query: 431 GVDRGGDAHFDDDELWLLEP--KDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPWY 604
G HFDDDE W + K + E T L AVA+HE GH+LGL HS + A+M P+Y
Sbjct: 220 ---ESGMFHFDDDENWTYKDARKIHNNEATDLLAVAIHEGGHTLGLEHSRDENAIMAPFY 276
Query: 605 Q 607
Q
Sbjct: 277 Q 277
>U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical
protein T21D11.1 protein.
Length = 279
Score = 88.2 bits (209), Expect = 4e-18
Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Frame = +2
Query: 236 SLLDP--YETRSVLARALDVWEQASRLTFTE-----VNSEEADILVSFAKRYHDDAYLFD 394
+LLDP + R+ + RA + W S + F E V + DI ++F K H D + FD
Sbjct: 62 NLLDPDVFIVRNTMHRAFNEWSTVSSVDFREIPPDLVTKQPPDIYIAFEKGEHSDGFPFD 121
Query: 395 GRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSS 574
G+ ++AHAF+P R G HFD +E W L + EG +LF AVHE GH LGL HS
Sbjct: 122 GQDGVVAHAFYP---RDGRLHFDAEEQWSL----NSVEGVNLFQTAVHEIGHLLGLEHSM 174
Query: 575 VKGALMY 595
A M+
Sbjct: 175 DVRAAMF 181
>AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like protein
protein.
Length = 279
Score = 88.2 bits (209), Expect = 4e-18
Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Frame = +2
Query: 236 SLLDP--YETRSVLARALDVWEQASRLTFTE-----VNSEEADILVSFAKRYHDDAYLFD 394
+LLDP + R+ + RA + W S + F E V + DI ++F K H D + FD
Sbjct: 62 NLLDPDVFIVRNTMHRAFNEWSTVSSVDFREIPPDLVTKQPPDIYIAFEKGEHSDGFPFD 121
Query: 395 GRGTILAHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSS 574
G+ ++AHAF+P R G HFD +E W L + EG +LF AVHE GH LGL HS
Sbjct: 122 GQDGVVAHAFYP---RDGRLHFDAEEQWSL----NSVEGVNLFQTAVHEIGHLLGLEHSM 174
Query: 575 VKGALMY 595
A M+
Sbjct: 175 DVRAAMF 181
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 85.4 bits (202), Expect = 3e-17
Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQAS--------RLTFTEVNS-EEADILVSFAKRYHDDAYLFD 394
+D ETR V+ +A +W S LTF E +S +EADI + +A+ H D + FD
Sbjct: 124 IDRLETRKVVEKAFKLWSSQSYIKNEKKVTLTFQEASSKDEADINILWAEGNHGDEHDFD 183
Query: 395 G---------RGTILAHAFFPGVDR--GGDAHFDDDELWLLEPKDDDEEGTSLFA--VAV 535
G + +LAH FFPG R GD HFDD E W ++ F V
Sbjct: 184 GANGKIEGNKKENVLAHTFFPGYARPLNGDIHFDDAEDWEIDVDQVGHGSNKRFFPYVLA 243
Query: 536 HEFGHSLGLSHSSVKGALMYPWYQGI 613
HE GH+LGL HS ALM+P+Y+ +
Sbjct: 244 HEIGHALGLDHSQKADALMHPYYKNV 269
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 85.4 bits (202), Expect = 3e-17
Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQAS--------RLTFTEVNS-EEADILVSFAKRYHDDAYLFD 394
+D ETR V+ +A +W S LTF E +S +EADI + +A+ H D + FD
Sbjct: 156 IDRLETRKVVEKAFKLWSSQSYIKNEKKVTLTFQEASSKDEADINILWAEGNHGDEHDFD 215
Query: 395 G---------RGTILAHAFFPGVDR--GGDAHFDDDELWLLEPKDDDEEGTSLFA--VAV 535
G + +LAH FFPG R GD HFDD E W ++ F V
Sbjct: 216 GANGKIEGNKKENVLAHTFFPGYARPLNGDIHFDDAEDWEIDVDQVGHGSNKRFFPYVLA 275
Query: 536 HEFGHSLGLSHSSVKGALMYPWYQGI 613
HE GH+LGL HS ALM+P+Y+ +
Sbjct: 276 HEIGHALGLDHSQKADALMHPYYKNV 301
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 85.4 bits (202), Expect = 3e-17
Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Frame = +2
Query: 242 LDPYETRSVLARALDVWEQAS--------RLTFTEVNS-EEADILVSFAKRYHDDAYLFD 394
+D ETR V+ +A +W S LTF E +S +EADI + +A+ H D + FD
Sbjct: 65 IDRLETRKVVEKAFKLWSSQSYIKNEKKVTLTFQEASSKDEADINILWAEGNHGDEHDFD 124
Query: 395 G---------RGTILAHAFFPGVDR--GGDAHFDDDELWLLEPKDDDEEGTSLFA--VAV 535
G + +LAH FFPG R GD HFDD E W ++ F V
Sbjct: 125 GANGKIEGNKKENVLAHTFFPGYARPLNGDIHFDDAEDWEIDVDQVGHGSNKRFFPYVLA 184
Query: 536 HEFGHSLGLSHSSVKGALMYPWYQGI 613
HE GH+LGL HS ALM+P+Y+ +
Sbjct: 185 HEIGHALGLDHSQKADALMHPYYKNV 210
>Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical
protein H36L18.1 protein.
Length = 446
Score = 76.6 bits (180), Expect = 1e-14
Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 31/133 (23%)
Frame = +2
Query: 302 SRLTFTEVNSEE---ADILVSFAKRYHDDAYLFDGRGTILAHAFFPGVDRGGDAHFDDDE 472
+RL F V+ E+ A+I + FA H+D FDG+G ILAHAFFP GGD HFD+DE
Sbjct: 10 TRLWFVAVDDEDEQKANIDIVFAAGDHEDGEPFDGKGNILAHAFFPRY--GGDVHFDEDE 67
Query: 473 LW-----------LLEPKDDD-------EEGTSLF----------AVAVHEFGHSLGLSH 568
LW + K+D E + +F AVAVHE GHSLGL H
Sbjct: 68 LWSANKTSIVFLFSINHKNDSFFLYTNKVENSKMFLKVQEGVDLYAVAVHEIGHSLGLKH 127
Query: 569 SSVKGALMYPWYQ 607
SS ++M P+Y+
Sbjct: 128 SSNHLSIMAPFYK 140
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 50.8 bits (116), Expect = 7e-07
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 254 ETRSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYL-FDGRGTILAHAFFP 430
+ R + +A W + + + E + + +++S + H + FD + LAHAFFP
Sbjct: 125 DLRRTMHQAASQWSELADVEIVESSVKNPMMVISAGRENHYPCTVRFDTK--TLAHAFFP 182
Query: 431 GVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPW 601
G H +D + + + SL++V HE GH+LG SHS ++M+ +
Sbjct: 183 ---TNGQIHINDRVQFAMTNYTERMGANSLYSVVAHEMGHALGFSHSPDIDSVMFAY 236
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 50.8 bits (116), Expect = 7e-07
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +2
Query: 254 ETRSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYL-FDGRGTILAHAFFP 430
+ R + +A W + + + E + + +++S + H + FD + LAHAFFP
Sbjct: 125 DLRRTMHQAASQWSELADVEIVESSVKNPMMVISAGRENHYPCTVRFDTK--TLAHAFFP 182
Query: 431 GVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALMYPW 601
G H +D + + + SL++V HE GH+LG SHS ++M+ +
Sbjct: 183 ---TNGQIHINDRVQFAMTNYTERMGANSLYSVVAHEMGHALGFSHSPDIDSVMFAY 236
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/127 (25%), Positives = 53/127 (41%)
Frame = +2
Query: 233 PSLLDPYETRSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYLFDGRGTIL 412
P+ L + RS A + W +AS F E DI ++F +D + L
Sbjct: 131 PNTLSQAQIRSAAHEAFEQWTRASGFKFVETTGATPDITITF----------YDVPQSNL 180
Query: 413 AHAFFPGVDRGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSHSSVKGALM 592
A D ++ W K G SL+ +HE GH LGL H+ +G++M
Sbjct: 181 RIAGSASKPVNSHIILDKNQEWAY--KSQAPMGISLYHTLLHEIGHILGLPHTFYRGSIM 238
Query: 593 YPWYQGI 613
+P ++ +
Sbjct: 239 HPIFKPV 245
>Z74039-2|CAA98501.1| 448|Caenorhabditis elegans Hypothetical
protein K03B8.2 protein.
Length = 448
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 506 EGTSLFAVAVHEFGHSLGLSHS 571
+G +F AVHE HSLGL H+
Sbjct: 161 DGCLIFGTAVHEIMHSLGLFHT 182
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 291 QTSRARANTLRVSYGSSREGRRVDDKRCR 205
++SR RANT S G+ +E +R +K CR
Sbjct: 73 KSSRKRANTTSSSGGNEKESKRTANKVCR 101
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 291 QTSRARANTLRVSYGSSREGRRVDDKRCR 205
++SR RANT S G+ +E +R +K CR
Sbjct: 73 KSSRKRANTTSSSGGNEKESKRTANKVCR 101
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 291 QTSRARANTLRVSYGSSREGRRVDDKRCR 205
++SR RANT S G+ +E +R +K CR
Sbjct: 73 KSSRKRANTTSSSGGNEKESKRTANKVCR 101
>Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical
protein T03F7.3 protein.
Length = 337
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 15 PNMLIKHPINYYVFAPITGFNSFPFSVFCFMRVPL 119
P +++ P+NYY F+ IT + + + FCF+ + L
Sbjct: 257 PFVIMAVPVNYYSFSIITDYYNQSANNFCFLIMSL 291
>AL031635-3|CAB54383.1| 149|Caenorhabditis elegans Hypothetical
protein Y47D3B.2b protein.
Length = 149
Score = 28.3 bits (60), Expect = 4.6
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +2
Query: 272 ARAL-DVWEQASRLTFTEVNSEEADILVSFA--KRYHDDAYLFDGRGTILAHAFFPGVDR 442
ARA D +R TE+ A + F KR A++ D RG AF + R
Sbjct: 63 ARAFYDEKRGGARAFLTEMKRGGARVFQGFEDEKRGGARAFMMDKRGG--GRAFGDMMKR 120
Query: 443 GGDAHFDD----DELWLLEPKDDDEEG 511
GG F + DE W++ P +DD G
Sbjct: 121 GGARAFVENSKRDEDWVIRPFEDDRLG 147
>AF040647-1|AAB94994.1| 45|Caenorhabditis elegans Hypothetical
protein F54D12.4 protein.
Length = 45
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 75 NSFPFSVFCFMRVPLFNCTRKASNRFCYVLFADFLRPKENECQLC 209
NSF S F + P+F C R +N CY+L +D + QLC
Sbjct: 4 NSFVSSFFIAIPQPVF-CQR--ANFLCYILNSDMMNELFELAQLC 45
>U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate
filament, c protein2, isoform c protein.
Length = 685
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 485 LTTRVRHHQSARHHRGPRQERKRELESYLVHRIDMHRHGNVWRTRQGYR 339
LTT + + AR G R E + E Y+V R D N R QGY+
Sbjct: 250 LTTTIVDIEPARF--GRRTEEYKIQEEYIVQRYDNGSSPNYQRQEQGYQ 296
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 485 LTTRVRHHQSARHHRGPRQERKRELESYLVHRIDMHRHGNVWRTRQGYR 339
LTT + + AR G R E + E Y+V R D N R QGY+
Sbjct: 250 LTTTIVDIEPARF--GRRTEEYKIQEEYIVQRYDNGSSPNYQRQEQGYQ 296
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -3
Query: 485 LTTRVRHHQSARHHRGPRQERKRELESYLVHRIDMHRHGNVWRTRQGYR 339
LTT + + AR G R E + E Y+V R D N R QGY+
Sbjct: 250 LTTTIVDIEPARF--GRRTEEYKIQEEYIVQRYDNGSSPNYQRQEQGYQ 296
>U50197-1|AAA91254.1| 329|Caenorhabditis elegans Hypothetical
protein F25E2.1 protein.
Length = 329
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 67 RVLIVSPFLFSVLCAFRYLIALVKHQIAFVTYYLLIF 177
R LI FL + YLI +V+H +A V +Y+ F
Sbjct: 152 RSLIFCIFLDFLPVCILYLICVVEHDVAKVLFYIFAF 188
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 57 APITGFNSFPFSVFCFMRVPLFNCTRKASNRFCYVLFA 170
AP+ N F F + +RV +NC+R RF +V+F+
Sbjct: 10 APLLKPNIFGFFRY-LLRVSPYNCSRSNPIRFLFVIFS 46
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.5 bits (58), Expect = 8.0
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +2
Query: 236 SLLDPYETRSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYLFDGRGTILA 415
SL P R L + ++W++ +++ + E + + + K D + FD +
Sbjct: 213 SLYFPLNIRITLVHS-EIWKKGDQISVIPDSKETLNNFMEYKKIMLKD-HFFDTGYLMTT 270
Query: 416 HAFFPGVD----RGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
F GV +G +D ++ +D E + FA HE GH+ G+ H
Sbjct: 271 LKFDEGVVGKAYKGTMCSYDYSGGIYVDHNNDTVETVATFA---HELGHTFGMDH 322
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.5 bits (58), Expect = 8.0
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +2
Query: 236 SLLDPYETRSVLARALDVWEQASRLTFTEVNSEEADILVSFAKRYHDDAYLFDGRGTILA 415
SL P R L + ++W++ +++ + E + + + K D + FD +
Sbjct: 213 SLYFPLNIRITLVHS-EIWKKGDQISVIPDSKETLNNFMEYKKIMLKD-HFFDTGYLMTT 270
Query: 416 HAFFPGVD----RGGDAHFDDDELWLLEPKDDDEEGTSLFAVAVHEFGHSLGLSH 568
F GV +G +D ++ +D E + FA HE GH+ G+ H
Sbjct: 271 LKFDEGVVGKAYKGTMCSYDYSGGIYVDHNNDTVETVATFA---HELGHTFGMDH 322
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 293 PKRRGRVPTRCVSRTGPVEKDDASMTNVAELALIFFGPQKISK 165
PK++G+ P + ++ VE+ D +V E P+K SK
Sbjct: 516 PKKKGKTPRKSSKKSAAVEESDNEEEDVEESPKKRTSPRKSSK 558
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,531
Number of Sequences: 27780
Number of extensions: 303448
Number of successful extensions: 1107
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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