Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1218
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 106 CAFRYLIALVKHQIAFVTYYLLIFCGPKKMSASSATFVID-ASSFSTGPVRDTQ 264
           C F+    +  H+++   +YL ++     +  S  T V+  A  F + P  DTQ
Sbjct: 92  CFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYP-HDTQ 144


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 512 TSLFAVAVHEFGHSLGLSHSSVKGAL 589
           T L  + + +FG  L  SH S + AL
Sbjct: 521 TKLSKIILMQFGDKLESSHDSFQAAL 546


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 512 TSLFAVAVHEFGHSLGLSHSSVKGAL 589
           T L  + + +FG  L  SH S + AL
Sbjct: 559 TKLSKIILMQFGDKLESSHDSFQAAL 584


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -3

Query: 500 RHLWALTTRVRHHQSARHHRGPRQERKRELESYLVHRIDMHRHGNV 363
           R LW    +VR           RQER R    +      MH + +V
Sbjct: 578 RALWPTEWKVRPSTVEEREEFRRQERMRYAAPHKAFTYRMHGYASV 623


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 273 HAPSTFGNK-----PPDLLSQK*IRKRPISLSRSPNVTMTMHIYSM 395
           H+ ST  +K       DLLS   + +R  S++ +  VT+T+ + +M
Sbjct: 215 HSESTIDSKFGLGFTTDLLSYNILLRRHYSMNSTTYVTLTIVLMTM 260


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 VPALQRLSSTRRPSLLDPYETR 262
           V  + R+ STRRPS  +  E++
Sbjct: 392 VSGINRVGSTRRPSRRNSCESQ 413


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 305  GRLVPKRRGRVPT 267
            GR VP+R  RVPT
Sbjct: 1362 GRPVPERPERVPT 1374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,019
Number of Sequences: 438
Number of extensions: 3945
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)