Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1210
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    63   1e-11
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   2.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   3.4  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   3.4  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    24   6.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   6.0  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    24   6.0  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   7.9  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 62.9 bits (146), Expect = 1e-11
 Identities = 34/82 (41%), Positives = 52/82 (63%)
 Frame = +2

Query: 107 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 286
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 287 ERAEVTPPEDDPKQLFVAMTSD 352
           + A    PE+  K L VA +SD
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSD 104


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 161  KSVKNIQKITQSMKMVSAAKYTRAERDLK 247
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 122  RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 244
            +N    KAI I  K VKNI   T ++++       RA + L
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 47  ICKMLGRFGPGVGTQVVAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 223
           +   LG F   VG    A V   P  N+A  +   +R K+V ++ K+   +      +Y
Sbjct: 69  LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = +2

Query: 137 LKAISIRLKSVKNIQKITQSMK 202
           L+AIS+RL++++  +++ QSM+
Sbjct: 86  LQAISLRLQTMRTSEQMMQSMR 107


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 134 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 274
           T + IS RL   +NI+++ Q  + + +A +  A+R  K  +P  +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 128 YSCLADGKPPPRLGCRHPVRSV-PTFCKFY 42
           Y+  A+G PP   GC HP+  V   F KF+
Sbjct: 209 YNFAAEGIPPAG-GCLHPLMKVREEFRKFF 237


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 109 VNHRHDLGADTRSEASQHFANFMGVYR*NLP 17
           +N   D+ A+  +E S     F+G +R N+P
Sbjct: 1   MNTSQDVNAEAANERSALLPRFLGSHRGNVP 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,780
Number of Sequences: 5004
Number of extensions: 32409
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)