Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1210
(353 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 49 9e-07
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 44 3e-05
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 4.2
04_01_0260 - 3506672-3508981 26 7.4
04_01_0254 + 3388215-3388553,3388869-3390830 26 7.4
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 26 7.4
09_02_0365 + 7910800-7910874,7911735-7911842,7911957-7912046,791... 26 9.8
05_06_0049 + 25182075-25182332,25182624-25182882,25182986-251832... 26 9.8
05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751 26 9.8
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 26 9.8
>07_03_0571 - 19602755-19603831
Length = 358
Score = 49.2 bits (112), Expect = 9e-07
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +2
Query: 134 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 310
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 311 ED 316
ED
Sbjct: 97 ED 98
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +2
Query: 140 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 319
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 320 PKQLFVAMTSD 352
K + VA+TSD
Sbjct: 117 KKNVIVAITSD 127
>03_05_0223 - 22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.1 bits (57), Expect = 4.2
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 110 HQPNRNMATLKAISIRLKSVKN--IQKITQSMKMVSAAK-YTRAERDLKAARPYGEGAVQ 280
+ P+R A +K + RLKS K ++++ + +SA K R +++ + A YG+ A+
Sbjct: 848 YDPDRERAQMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGK-AMA 906
Query: 281 FYERAE 298
F + E
Sbjct: 907 FLQEQE 912
>04_01_0260 - 3506672-3508981
Length = 769
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 60 WDASDRVSAPKSWRWFTISQTGIWLL*RPFPSVLNL*KISRKSHSP*RW 206
W S P+SW + +G W + R F LNL + S++P R+
Sbjct: 331 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLVNSNNPTRY 379
>04_01_0254 + 3388215-3388553,3388869-3390830
Length = 766
Score = 26.2 bits (55), Expect = 7.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 60 WDASDRVSAPKSWRWFTISQTGIWLL*RPFPSVLNL*KISRKSHSP*RWCQLLNT 224
W S P+SW + +G W + R F LNL + + P R+ L T
Sbjct: 326 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLANNKKPTRYRMWLGT 380
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/51 (19%), Positives = 27/51 (52%)
Frame = +2
Query: 110 HQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 262
+ ++ + TL+ S + ++ +QK+++ + + S Y RD+ ++ Y
Sbjct: 231 YNSDKMVGTLQVASTGIVALSYVQKVSEKVSLASDFMYNHMSRDVTSSFGY 281
>09_02_0365 +
7910800-7910874,7911735-7911842,7911957-7912046,
7912164-7912223,7912365-7912487
Length = 151
Score = 25.8 bits (54), Expect = 9.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 64 TLRTGCRHPSRGGGLPSAKQEYGYFEGHFHPS*ICEK 174
T TG + P R GG P K+ F G + S I K
Sbjct: 2 TSSTGPKSPVRNGGSPPHKKSTSEFRGRKNESQILRK 38
>05_06_0049 +
25182075-25182332,25182624-25182882,25182986-25183204,
25183890-25184032,25184600-25184899
Length = 392
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 53 KMLGRFGPGVGTQVVAVVYHQPNRNMATLKAI 148
KML G+G V YH+P+R + A+
Sbjct: 165 KMLSSPEVGIGPYVEVAFYHKPSRTLLVTDAV 196
>05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751
Length = 311
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +2
Query: 113 QPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAAR 256
+P+ +A++ + R+K V +++K S +M +AAK +E ++A+
Sbjct: 247 EPDEEVASMD-VKDRIKKVASMKKKKSSKEMDTAAKIAASEAAARSAK 293
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 69 SDRVSAPKSWRWFTISQTGIWL 134
S RVS PK W ++S G W+
Sbjct: 453 SPRVSTPKEWLVRSVSSLGSWV 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,613
Number of Sequences: 37544
Number of extensions: 234492
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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