Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1210
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   6e-20
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   1.4  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   2.5  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           27   5.8  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 26   7.7  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               26   7.7  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 93.1 bits (221), Expect = 6e-20
 Identities = 41/69 (59%), Positives = 56/69 (81%)
 Frame = +2

Query: 146 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 325
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 326 QLFVAMTSD 352
            L V ++SD
Sbjct: 122 HLIVVLSSD 130


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 208 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 113
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 55  NVGTLRTGCRHPSRGGGLP 111
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 287  HRTVLHLHHRDEQLSGHAQHGC 222
            +R  LH+ H +++L  H  H C
Sbjct: 1068 NRNTLHVKHANQRLGSHGNHSC 1089


>SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 64  TLRTGCRHPSRGGGLPSAKQEYGYFEGHFH 153
           T  T   HPS+G G      E GY +G  H
Sbjct: 20  TQSTCAPHPSKGVGCTGVADEGGYLKGQCH 49


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -1

Query: 104 PPPRLGCRH--PVRSVPTF 54
           PP R GCRH  P RS P+F
Sbjct: 351 PPSRRGCRHSRPGRSSPSF 369


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 338 QQTIAWGHLREV*PQPFHRTVLHLHHRDEQL 246
           Q  + WG LR + P+ F   +LH  H D  L
Sbjct: 874 QDCVLWG-LRVIIPEAFQEKILHDLHADHPL 903


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 209 SAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQL 331
           +AAK ++A +  +A +P  + A       EV PPE++P+QL
Sbjct: 827 AAAKSSKAPKPKQAPKPESKAAAS----TEV-PPEEEPRQL 862


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,335
Number of Sequences: 59808
Number of extensions: 259269
Number of successful extensions: 639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)