Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1210
         (353 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12701-1|CAA73233.1|  169|Drosophila melanogaster ATP synthase, ...   122   1e-28
AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p pro...   122   1e-28
AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC...   122   1e-28
AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB...   122   1e-28
AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA...   122   1e-28
AY113418-1|AAM29423.1|  660|Drosophila melanogaster RE17456p pro...    27   6.9  
AY061037-1|AAL28585.1|  359|Drosophila melanogaster HL07462p pro...    27   6.9  
AF323977-1|AAL55992.1|  660|Drosophila melanogaster fused lobes ...    27   6.9  
AE013599-1505|AAM68692.1|  660|Drosophila melanogaster CG8824-PC...    27   6.9  
AE013599-1504|AAM68691.2|  673|Drosophila melanogaster CG8824-PB...    27   6.9  

>Y12701-1|CAA73233.1|  169|Drosophila melanogaster ATP synthase,
           gamma subunit protein.
          Length = 169

 Score =  122 bits (294), Expect = 1e-28
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 277
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 278 QFYERAEVTPPED-DPKQLFVAMTSD 352
           QF+E+ E+ P E  +PK+L +A+TSD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSD 101


>AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p
           protein.
          Length = 297

 Score =  122 bits (294), Expect = 1e-28
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 277
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 278 QFYERAEVTPPED-DPKQLFVAMTSD 352
           QF+E+ E+ P E  +PK+L +A+TSD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSD 101


>AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC,
           isoform C protein.
          Length = 297

 Score =  122 bits (294), Expect = 1e-28
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 277
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 278 QFYERAEVTPPED-DPKQLFVAMTSD 352
           QF+E+ E+ P E  +PK+L +A+TSD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSD 101


>AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB,
           isoform B protein.
          Length = 297

 Score =  122 bits (294), Expect = 1e-28
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 277
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 278 QFYERAEVTPPED-DPKQLFVAMTSD 352
           QF+E+ E+ P E  +PK+L +A+TSD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSD 101


>AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA,
           isoform A protein.
          Length = 297

 Score =  122 bits (294), Expect = 1e-28
 Identities = 62/86 (72%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 98  AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 277
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 278 QFYERAEVTPPED-DPKQLFVAMTSD 352
           QF+E+ E+ P E  +PK+L +A+TSD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSD 101


>AY113418-1|AAM29423.1|  660|Drosophila melanogaster RE17456p
           protein.
          Length = 660

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 202 LHGL-CDF-LDIFHRFKTDGNGLQSSHIPVW 116
           L GL CDF L    R K   NG+   H+ VW
Sbjct: 456 LRGLWCDFMLQAMARLKLANNGVAPKHVAVW 486


>AY061037-1|AAL28585.1|  359|Drosophila melanogaster HL07462p
           protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 202 LHGL-CDF-LDIFHRFKTDGNGLQSSHIPVW 116
           L GL CDF L    R K   NG+   H+ VW
Sbjct: 155 LRGLWCDFMLQAMARLKLANNGVAPKHVAVW 185


>AF323977-1|AAL55992.1|  660|Drosophila melanogaster fused lobes
           protein.
          Length = 660

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 202 LHGL-CDF-LDIFHRFKTDGNGLQSSHIPVW 116
           L GL CDF L    R K   NG+   H+ VW
Sbjct: 456 LRGLWCDFMLQAMARLKLANNGVAPKHVAVW 486


>AE013599-1505|AAM68692.1|  660|Drosophila melanogaster CG8824-PC,
           isoform C protein.
          Length = 660

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 202 LHGL-CDF-LDIFHRFKTDGNGLQSSHIPVW 116
           L GL CDF L    R K   NG+   H+ VW
Sbjct: 456 LRGLWCDFMLQAMARLKLANNGVAPKHVAVW 486


>AE013599-1504|AAM68691.2|  673|Drosophila melanogaster CG8824-PB,
           isoform B protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 202 LHGL-CDF-LDIFHRFKTDGNGLQSSHIPVW 116
           L GL CDF L    R K   NG+   H+ VW
Sbjct: 469 LRGLWCDFMLQAMARLKLANNGVAPKHVAVW 499


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,252
Number of Sequences: 53049
Number of extensions: 396219
Number of successful extensions: 1071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 859222404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)