Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1210
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical ...    90   4e-19
AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical ...    90   4e-19
AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...    90   4e-19
Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    27   5.0  
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    27   5.0  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      27   5.0  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    26   6.6  
Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81041-4|CAB02789.1|  108|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U97003-2|AAB52271.2|  376|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18c protein.
          Length = 200

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
 Frame = +2

Query: 122 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 292
           R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++    
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82

Query: 293 -AEVTPPEDDPKQLFVAMTSD 352
             E    ++  KQ+ V +TSD
Sbjct: 83  VVEGVEKQESKKQVLVLITSD 103


>AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18a protein.
          Length = 299

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
 Frame = +2

Query: 122 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 292
           R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++    
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82

Query: 293 -AEVTPPEDDPKQLFVAMTSD 352
             E    ++  KQ+ V +TSD
Sbjct: 83  VVEGVEKQESKKQVLVLITSD 103


>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score = 90.2 bits (214), Expect = 4e-19
 Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
 Frame = +2

Query: 122 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 292
           R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F++    
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82

Query: 293 -AEVTPPEDDPKQLFVAMTSD 352
             E    ++  KQ+ V +TSD
Sbjct: 83  VVEGVEKQESKKQVLVLITSD 103


>Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical
           protein K01D12.1 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 77  PVRSVPTFCKFYGCLSVKFTSRRKN 3
           PV   PTF  FY C+  K  S R N
Sbjct: 52  PVEGTPTFKAFYNCVYPKLASLRGN 76


>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 301 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 185
           N+ PF+   CTF  G  S Q  LS        HL  LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 95  VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 235
           V +    PN     L  + I LKS++N QK    +K     K  + E
Sbjct: 509 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGE 555


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 95  VAVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAE 235
           V +    PN     L  + I LKS++N QK    +K     K  + E
Sbjct: 595 VTIYDEDPNNRFEFLGRVQIPLKSIRNCQKRWYGLKDEKLRKRVKGE 641


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 254  RPYGEGAVQFYERAEVTPP 310
            RP+GEGA +  E A+VT P
Sbjct: 1366 RPFGEGAERRTEEADVTTP 1384


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 301 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGLCD 185
           N+ PF+   CTF  G  S Q  LS        HL  LCD
Sbjct: 189 NVCPFVPYGCTFAGGKESIQQHLSD---EPVRHLMYLCD 224


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 104 PPPRLGCRHPVRSVPTFCKFYG 39
           PPP+ GC    RS+P    F+G
Sbjct: 71  PPPQCGCGRKKRSLPEKPTFFG 92


>Z81041-14|CAN99675.1|  684|Caenorhabditis elegans Hypothetical
           protein C27A7.5e protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 142 LQSSHIPVWLMVNHRHDLGADTRS 71
           L  +H+P  L+V H H+ GA  R+
Sbjct: 40  LDENHLPKQLLVQHHHEDGAFLRN 63


>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 142 LQSSHIPVWLMVNHRHDLGADTRS 71
           L  +H+P  L+V H H+ GA  R+
Sbjct: 71  LDENHLPKQLLVQHHHEDGAFLRN 94


>Z81041-4|CAB02789.1|  108|Caenorhabditis elegans Hypothetical
           protein C27A7.5b protein.
          Length = 108

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 142 LQSSHIPVWLMVNHRHDLGADTRS 71
           L  +H+P  L+V H H+ GA  R+
Sbjct: 71  LDENHLPKQLLVQHHHEDGAFLRN 94


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 142 LQSSHIPVWLMVNHRHDLGADTRS 71
           L  +H+P  L+V H H+ GA  R+
Sbjct: 69  LDENHLPKQLLVQHHHEDGAFLRN 92


>U97003-2|AAB52271.2|  376|Caenorhabditis elegans Hypothetical
           protein F47C10.1 protein.
          Length = 376

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 128 YSCLADGKPPPRLGCRHPVRSVPTFCKFYGCLSV 27
           Y+CLADG      G  H  R     C+F  CL V
Sbjct: 51  YTCLADGSCYTNFGFTHG-RPKCRSCRFRKCLDV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,489
Number of Sequences: 27780
Number of extensions: 188782
Number of successful extensions: 456
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)