Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1210
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast...    49   1e-06
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast...    43   7e-05
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    40   4e-04
At1g67623.1 68414.m07708 F-box family protein hypothetical prote...    27   4.7  
At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    26   6.3  

>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
           (ATPC1) identical to SP|Q01908 ATP synthase gamma chain
           1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}
          Length = 373

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 23/50 (46%), Positives = 35/50 (70%)
 Frame = +2

Query: 131 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 280
           A+L+ +  R+ SVKN QKIT++MK+V+AAK  RA+  +   RP+ E  V+
Sbjct: 51  ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVE 100


>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
           (ATPC2) identical to SP|Q01909 ATP synthase gamma chain
           2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase;
           similar to ATP synthase gamma-subunit GI:21241 from
           [Spinacia oleracea]
          Length = 386

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 20/50 (40%), Positives = 34/50 (68%)
 Frame = +2

Query: 131 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 280
           A ++ +  R+ SVKN QKIT++M++V+AA+  RA+  +   RP+ E  V+
Sbjct: 61  AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVE 110


>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 27/77 (35%), Positives = 44/77 (57%)
 Frame = +2

Query: 122 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEV 301
           R+++T + +  R+KSVKNIQKIT++MKMV+A+K    +   + +R   +    F      
Sbjct: 41  RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96

Query: 302 TPPEDDPKQLFVAMTSD 352
            P  D  K + V ++SD
Sbjct: 97  NPSIDVKKSVVVTLSSD 113


>At1g67623.1 68414.m07708 F-box family protein hypothetical protein
           ; similar to SKP1 interacting partner 2 (SKIP2)
           TIGR_Ath1:At5g67250
          Length = 296

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 158 LKSVKNIQKITQSMKMVSAAKYTRAERDLKAAR--PYGEGAVQFYER-AEVTPPE 313
           L +V+N++ +++S + +   KY      LK     P+ E + +F ER  E   PE
Sbjct: 44  LSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSAKFIERCTESRNPE 98


>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 210 DTIFMDCVIFWIFFTDLRRMEMAFKVAIF 124
           D +   CV+  IFF DL+  E   +VA++
Sbjct: 2   DFVEFVCVVLTIFFMDLKISEATSRVALY 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,713,001
Number of Sequences: 28952
Number of extensions: 180131
Number of successful extensions: 387
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)