Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1206
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058576-1|AAL13805.1| 1602|Drosophila melanogaster LD27111p pro...    29   4.3  
AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA...    29   4.3  
AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB...    29   4.3  
AE014296-890|AAF47929.2| 1765|Drosophila melanogaster CG18296-PA...    29   5.7  

>AY058576-1|AAL13805.1| 1602|Drosophila melanogaster LD27111p
           protein.
          Length = 1602

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 639 LNRNVLMKNKETCILAYYSVFILT*R-KLRNKYNLKPIT 526
           L+ N   K+ + C L YY  F +T R + +  Y LKP T
Sbjct: 272 LDANYASKDVQECALDYYLAFYITPRIRYKYAYKLKPCT 310


>AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA,
           isoform A protein.
          Length = 1877

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 639 LNRNVLMKNKETCILAYYSVFILT*R-KLRNKYNLKPIT 526
           L+ N   K+ + C L YY  F +T R + +  Y LKP T
Sbjct: 272 LDANYASKDVQECALDYYLAFYITPRIRYKYAYKLKPCT 310


>AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB,
           isoform B protein.
          Length = 1693

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 639 LNRNVLMKNKETCILAYYSVFILT*R-KLRNKYNLKPIT 526
           L+ N   K+ + C L YY  F +T R + +  Y LKP T
Sbjct: 272 LDANYASKDVQECALDYYLAFYITPRIRYKYAYKLKPCT 310


>AE014296-890|AAF47929.2| 1765|Drosophila melanogaster CG18296-PA
           protein.
          Length = 1765

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 444 NIHSFFRNPQRPASVFFYLQVYTTIGEIFYSITNTENMITFD 319
           NI   FR+  RP +V  Y  V T+ G  F+ I  T + ++FD
Sbjct: 693 NIKFDFRS-SRPGAVLAYSDVTTSAGNGFWEIRLTSDKLSFD 733


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,634,671
Number of Sequences: 53049
Number of extensions: 434572
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)