Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1206
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z77652-10|CAI70404.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B3.12 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 516 LCGR*LVLDYICFLVFFM 569
           LCGR  V+D +CF ++F+
Sbjct: 260 LCGRAAVVDLVCFFIYFI 277


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
           protein F26H11.2c protein.
          Length = 2266

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 155 AIIICNFLQVNHRTCLXGDILDXSAFCSHYILHNLCCVMLETH 27
           A+ I   L+  HRT L         FC+  I HN  C+M E H
Sbjct: 258 AVEIYEILRSYHRT-LRITPFTFEDFCAALISHNNSCIMAEVH 299


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
           protein F26H11.2b protein.
          Length = 1693

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 155 AIIICNFLQVNHRTCLXGDILDXSAFCSHYILHNLCCVMLETH 27
           A+ I   L+  HRT L         FC+  I HN  C+M E H
Sbjct: 258 AVEIYEILRSYHRT-LRITPFTFEDFCAALISHNNSCIMAEVH 299


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
           protein F26H11.2a protein.
          Length = 1691

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 155 AIIICNFLQVNHRTCLXGDILDXSAFCSHYILHNLCCVMLETH 27
           A+ I   L+  HRT L         FC+  I HN  C+M E H
Sbjct: 258 AVEIYEILRSYHRT-LRITPFTFEDFCAALISHNNSCIMAEVH 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,331,802
Number of Sequences: 27780
Number of extensions: 248621
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)